Helicobacter pylori v225d: HPV225_0096
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Entry
HPV225_0096 CDS
T01899
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hpv
Helicobacter pylori v225d
Pathway
hpv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPV225_0096 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpv03021
]
HPV225_0096 (rpoD)
Transcription machinery [BR:
hpv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPV225_0096 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
WYL_3
MCR_beta_N
Sigma70_r4_2
HTH_25
SieB
Motif
Other DBs
NCBI-ProteinID:
ADI34197
LinkDB
All DBs
Position
complement(83288..85321)
Genome browser
AA seq
677 aa
AA seq
DB search
MKKKANEEKAPKKAKAEAAQENKTKENNKAKENKIKESKIKEAKTKEGKIKETKAKEPVP
VKKLSFNEALEELFANSLSDCVSYESIIQISAKVPTLAQVKKIKELCQKYQKKLVSSSEY
AKKLNAIDKIKKTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLS
KDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENS
VSDSKKDDDSEEYEENEERKKVVSEKDRKRVEKVQESFKALDKAKKEWLKALEAPVDEKE
DELVRLLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPL
FNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLDPNK
LKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVD
KFEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKE
PDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMR
EDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIK
KLRSPQYGRILRNYLRI
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagctaacgaagaaaaagccccaaaaaaagccaaagcagaagccgcacag
gaaaataaaactaaagaaaacaataaagccaaagaaaataaaatcaaagaaagcaaaatt
aaagaagctaaaaccaaagaaggcaaaatcaaagaaactaaagcgaaagaacctgttcct
gttaaaaagcttagtttcaatgaagcgttagaagaattgttcgccaattccttaagcgat
tgcgtttcttatgagtctatcattcaaatcagtgcgaaagtccccactctagcccaagtc
aaaaaaatcaaagaattgtgccaaaaataccaaaagaaattagtcagctcttcagaatac
gctaaaaaactcaatgcgattgacaagattaaaaaaactgaagaaaagcaaaaagtttta
gatgaagaattagaagatggctatgactttttgaaagaaaaggattttttagagtggagc
agaagcgatagcccggtgcgcatgtatttgcgcgagatgggggatataaaacttttaagc
aaagatgaagagattgagttgagcaagcaaatccgcttgggcgaagacattattttagac
gcgatttgctcggtgccgtatttgattgattttatctatgcgtataaagacgctttaatc
aatcgtgaaagaagggttaaagagctttttaggagctttgatgatgacgatgaaaatagc
gtgagcgattctaaaaaagatgacgacagcgaagaatatgaagaaaacgaagaaaggaaa
aaagtcgtttctgaaaaagacaggaagcgtgtagaaaaggttcaagaaagctttaaagcc
ctagataaggctaaaaaagaatggctcaaagctcttgaagcccctgtagatgaaaaagaa
gatgagctagtgcgtttattgaccctagcttacaaacgccaaacgctcaaagacagactc
tatgacttagagcctaccagcaaactgattaatgaattagtcaaaacgatggaaaccact
ttaaaaagcggcgatgggtttgaaaaagagttgaaacgcttggaatacaaactgccctta
ttcaatgacaccctgatcgcaaaccataaaaaaatccttgccaatatcactaacatgact
aaagaagatattatcgctcaggtgccagaagcgactatggtgagcgtgtatatggatctt
aaaaagctttttttgactaaagaagcgagcgaggagggctttgatttagaccctaacaag
ctaaaagaaattttagagcaaatcaagagagggaaattgatttccgatcgcgctaaaaac
aaaatggctaaatccaatttaaggttagtggtgagtatcgctaaacgattcacgagcaga
ggcttaccattcttggatttgattcaagagggtaatatcggcttgatgaaagcggtggat
aagtttgagcatgaaaagggcttcaaattttctacctatgcgacctggtggatcaaacag
gctatcagcagagccatagccgatcaagcccgcactatccgcatccccattcacatgatt
gatacgatcaatcgcatcaataaagtcatgcgcaaacacattcaagaaaacggcaaagag
cctgatttggaagtggtggctgaagaagtggggctttcgttagataaagtgaagaatgtg
attaaggttactaaagagcctatcagtttggaaaccccagtcggcaatgatgatgacggc
aaatttggggatttcgtggaagataaaaatatcgttagctccattgatcacatcatgcga
gaagatttaaaagcgcaaattgaaagcgttttggatcagttgaatgagcgagaaaaagcg
gtgatccgcatgcgttttgggcttttagacgatgaaagcgatcgcactttagaagaaatc
ggcaaggaattgaatgttactagagaaagggtgcgccagattgaaagctctgcgattaaa
aaattgagaagcccgcaatacgggcgcattttaagaaactatttgcgcatttga
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