Helicobacter pylori v225d: HPV225_0278
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Entry
HPV225_0278 CDS
T01899
Symbol
xseA
Name
(GenBank) exodeoxyribonuclease VII, large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
hpv
Helicobacter pylori v225d
Pathway
hpv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HPV225_0278 (xseA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpv03400
]
HPV225_0278 (xseA)
Enzymes [BR:
hpv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
HPV225_0278 (xseA)
DNA repair and recombination proteins [BR:
hpv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HPV225_0278 (xseA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
CcmE
SSB
Motif
Other DBs
NCBI-ProteinID:
ADI34371
LinkDB
All DBs
Position
255879..257141
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AA seq
420 aa
AA seq
DB search
MDVLSVSEINAQIKALLEATFLQVRVQGEVSNLTIHKVSGHAYFSLKDSQSVIRCVLFKG
NANRLKFALKEGQEVVVFGGISAYVPRGDYQINCFEIEPKDIGSLTLALEQLKEKLRLKG
YFDKANKLPKPHFPKRVAVITSQNSAAWADMKKIASKRWPMCELVCINALMQGEGCVQSV
VESIAYADSFHDTKNAFDAIVVARGGGSMEDLYSFNDEKIADALHLAKTFSMSAIGHESD
FLLSDLIADLRASTPSNAMEILLPSSDEWLQRLDGFNLKLRRSFKILLHQKKAHLEHLEA
SLKRLSFENKHHLNALKLEKLKIALENKTLEFLRFKKTLLEKISTQTLTSPFLQTKTERL
NRLENALKLAHANLKLPQFGAFVSKNNQAIELEVLKRGDKIELSNEKARASATILSVDRV
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
gtggatgtattgagcgtgagcgaaatcaatgcgcaaatcaaagcccttttagaagcgact
tttttgcaagttagggttcaaggggaagtgagtaatttgacgatccacaaggtgagtggc
catgcgtatttttcgctcaaagacagccagtcagtcatcagatgcgtgctgtttaaaggg
aacgctaacaggctcaaattcgctttaaaagaagggcaggaagtggttgtttttgggggc
attagcgcgtatgttccaaggggggattatcaaatcaattgctttgaaatagagcctaaa
gatataggttcattaaccctagctttagagcaattgaaagaaaaattacgccttaaaggc
tattttgataaagccaataaattacccaaaccgcattttcctaaacgagtggcagtcatc
acttctcaaaattcagccgcttgggcggacatgaaaaagatcgcttccaaacgatggccg
atgtgcgaattggtttgcatcaatgcgttaatgcaaggggagggctgcgttcaaagcgtg
gtggagagcatcgcttatgcggatagctttcatgacacaaaaaacgcttttgatgcgatt
gtggtggctagaggtggggggagcatggaggatttgtattctttcaacgatgagaaaatc
gctgatgcattgcatttggctaaaactttcagcatgtcagctattgggcatgagagcgat
tttttattgagcgatttaatagcggatttaagggcttctacgccttcaaacgcgatggag
attttactccctagtagcgatgaatggttgcaaagacttgatgggtttaatttgaaattg
cgccgctcttttaaaattttgctccatcaaaaaaaggcgcatttagagcatttagaggct
tctttaaaacgattgagttttgaaaacaagcaccatttaaacgctttaaagctagagaaa
ctaaaaatcgctttagaaaataaaaccctagaatttttacgctttaaaaaaacgctttta
gaaaaaatctctactcaaacattaacaagcccttttttacaaactaaaacagagcgattg
aacaggctagaaaacgcccttaaactcgctcatgcaaatttgaaattaccccaatttggg
gcgtttgtgagcaaaaataaccaagcgatagaattagaggtattaaaaaggggcgataaa
attgaattgagtaatgaaaaagccagagcgagcgctactattttaagcgtggatagggtg
tag
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