Helicobacter pylori v225d: HPV225_0769
Help
Entry
HPV225_0769 CDS
T01899
Name
(GenBank) conserved hypothetical protein YmdA/YtgF
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
hpv
Helicobacter pylori v225d
Pathway
hpv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPV225_0769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpv03019
]
HPV225_0769
Messenger RNA biogenesis [BR:
hpv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPV225_0769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
KH_KhpA-B
UPF0242
Motif
Other DBs
NCBI-ProteinID:
ADI34843
LinkDB
All DBs
Position
complement(761995..763584)
Genome browser
AA seq
529 aa
AA seq
DB search
MSSGLIYISLEVLVACLISALAMYYVMKKIYYARGQTILKGASAKAKLMEFQAKSFVEAE
EMRMKSQECKLQQQYENKNLQLQTHFEKKEAHLKHLEAQHKEFVRDEKRYLEKEKQELEK
ERQILKQEKENFKKQRAVCKEAQAKALDAMLNYMAYTKDEIKNMVLEQLEEELEVQKSAL
IKRYEKEAKEEGKKKSYAILAEAVARFAGNYATENLTTRIALPCSDYIGRVIGKDGKNIE
AFKKVSGVDIEFSEGSSELYLSSFNLYRREVASETLKILIEDGRIQPNRIEEVYHRVARN
MEKELLSEGESVVLELELGAMEDELKILIGKMRYRSSFGQNALQHSKEVALLAGLIAEQL
EGDKKLARRAGILHDIGKALTQELGRDHVNLGVEVCKRHKEDPVVINAIYAHHGHEEIMS
VECASVCAADALSAGRPGARRKSDEEYAKRMQALEEIALEFDGVEKAYAMESGRELRVIV
KSNQVRDNQVPIIARKIAKKIEESAQYVGEVGVQVVRESRFKTTATLKQ
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgggttaatttacatttcattagaagtcttagtagcgtgtttgattagcgct
ttagcaatgtattatgtgatgaagaagatctattatgctagagggcaaaccattttaaaa
ggcgcttcagctaaagccaaattgatggaatttcaagcgaaatcttttgtggaagctgaa
gagatgcgcatgaaaagccaagaatgcaaattgcagcagcaatacgaaaacaaaaatttg
caactccaaacccattttgaaaaaaaagaagcgcatttgaagcatctagaagcgcagcac
aaagaatttgtaagagatgaaaaacgctatttggaaaaggaaaaacaagagcttgaaaaa
gaacgccaaattttaaagcaagaaaaagaaaattttaaaaaacagcgcgctgtttgcaaa
gaagctcaagccaaagcgctagatgcgatgctcaattacatggcttataccaaagatgaa
attaaaaacatggttttagagcaactagaagaagaattagaagtgcaaaaaagcgcgtta
atcaagcgttatgaaaaagaagccaaagaagagggcaagaaaaaatcgtatgccatttta
gcggaagcggtagcccgttttgcgggtaattatgcgacagagaatttaacaactcgcatt
gctttgccttgctcagattatatcggtcgtgtgataggcaaagatgggaaaaatattgaa
gcgtttaaaaaagtcagtggggtggatatagaatttagcgaaggtagcagcgaattgtat
ttgtccagtttcaatctttatcggcgtgaagtagcgagcgaaacgcttaaaattttaata
gaagacggccgtatccagcctaacaggattgaagaggtttatcatagagtcgcgcgcaac
atggaaaaagaattgctttctgaaggggagagcgtggtgctagaattagagcttggggct
atggaagatgagcttaaaattttaataggcaaaatgcgttatcgctccagttttgggcaa
aacgccttacagcattctaaagaagtcgctcttttagccggcttgattgcagaacagctt
gagggggataaaaaactcgccagaagagccggtattttgcatgatattggtaaggcactc
acccaagagcttgggagagatcatgtgaatttaggggttgaggtgtgcaagcgccataaa
gaagatccggttgtgattaatgcgatttatgcccaccatgggcatgaagagatcatgagc
gtggagtgcgcgagcgtgtgcgcggctgatgcgctttcagcagggcgtcctggggctaga
agaaagagcgatgaagaatacgccaaacgcatgcaggctttagaagagatcgcgctagaa
tttgatggggtggaaaaggcgtatgcgatggagagcgggcgagaattaagagtgattgtc
aaatccaaccaagtcagggacaatcaagtgcctattattgccagaaagatcgctaaaaag
atagaagagagcgctcagtatgtgggcgaagtgggcgtgcaggtggtgcgagaaagccgt
ttcaaaacgaccgctacgctcaagcaataa
DBGET
integrated database retrieval system
