Helicobacter pylori v225d: HPV225_0880
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Entry
HPV225_0880 CDS
T01899
Symbol
rfaD
Name
(GenBank) ADP-L-glycero-D-manno-heptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
hpv
Helicobacter pylori v225d
Pathway
hpv00541
Biosynthesis of various nucleotide sugars
hpv01100
Metabolic pathways
hpv01250
Biosynthesis of nucleotide sugars
Module
hpv_M00064
ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
hpv00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
HPV225_0880 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
hpv01005
]
HPV225_0880 (rfaD)
Enzymes [BR:
hpv01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
HPV225_0880 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
hpv01005
]
Core region
HPV225_0880 (rfaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
KR
FCSD_central
Ldh_1_N
Motif
Other DBs
NCBI-ProteinID:
ADI34946
LinkDB
All DBs
Position
complement(864037..865029)
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AA seq
330 aa
AA seq
DB search
MRYIDDELENQTILITGGAGFVGSNLAFYFQENHPKAKVVILDKFRSNTLFSNKRPSSLG
HFKNLIGFKGEVVIADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLDQELVMKTNYQAFL
NLSEIARSKKAKVIYASSAGVYGNTKAPNVVGKNESPENVYGFSKLCMDEFVLSHSNDNI
QVGLRYFNVYGPREFYKEKTASMVLQLALGIMAFKEVKLFEFGEQLRDFVYIEDVIQANV
KAMKAQKSGVYNVGYSQARSYNEIVSILKEHLGDFKVTYIKNPYAFFQNHTQAHIEPTIL
DLDYTPLYDLESGIKDYLPHIHAIFKGQRA
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcgttatattgatgatgagttagaaaatcaaacgattttaatcaccggtggggctggc
tttgtaggcagtaatctggccttttattttcaagagaaccaccctaaagccaaagtagta
attttggataaatttcgcagtaacacgcttttcagtaataagcgccccagttccttaggg
cattttaagaatttaatcggttttaagggtgaggtggttatagctgatattaataacccc
ttagatttaaggcgtttagaaaaattgcattttgattatttgttccaccaagccgctgtc
tctgatacgaccatgctggatcaagaattagtgatgaaaaccaactaccaggctttttta
aacctttcagaaatcgctcgctcaaaaaaagctaaagtgatttacgcttcttcagcgggc
gtttatggcaacaccaaagcccccaatgtggtaggcaaaaacgaaagccctgaaaatgtt
tatggcttttccaagctttgcatggatgaatttgttctctctcattcaaatgacaatatt
caagtgggcttaaggtattttaatgtctatgggcctagggaattttataaagaaaaaacc
gcctctatggttttgcaactcgccttaggcataatggcgtttaaggaagtcaagcttttt
gaatttggcgagcaattaagggattttgtctatattgaagatgtgattcaagcgaatgtg
aaagcgatgaaggctcaaaaaagcggggtttataatgtgggttattcccaagccagaagt
tataatgaaatagttagcattttaaaagagcatttaggggattttaaagtaacttatatc
aaaaacccttatgctttcttccaaaatcacacccaagcgcatattgaacctactattttg
gatttggattacacccctttatacgatttagaaagcggcattaaagattatttgccccat
atccatgcgatttttaaaggacagcgcgcatga
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