Helicobacter pylori v225d: HPV225_0931
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Entry
HPV225_0931 CDS
T01899
Name
(GenBank) ATP-dependent DNA helicase pcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpv
Helicobacter pylori v225d
Pathway
hpv03420
Nucleotide excision repair
hpv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPV225_0931
03430 Mismatch repair
HPV225_0931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpv03400
]
HPV225_0931
Enzymes [BR:
hpv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPV225_0931
DNA repair and recombination proteins [BR:
hpv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPV225_0931
MMR (mismatch excision repair)
Other MMR factors
HPV225_0931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
AAA_11
Viral_helicase1
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
ADI34995
LinkDB
All DBs
Position
914819..916846
Genome browser
AA seq
675 aa
AA seq
DB search
MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN
KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN
AIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKNPEHTPYAAFYENILDEFENTKK
KHNYIDYNDLLLLFKQAMLERPSPYKEVLCDEFQDTNPLQESILDAISPPSLFCVGDYDQ
SIYAFNGADISIISNFTQKYKNAQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVV
KSGHFNKPALLNYNDNIAQCQDIAKRIVMRKDFKEVAVIFRNNASADQLEAALRSHNVPS
KRKGSTSFFESKEVALALDICALIFNPKDIMAAIHVLSHISDIGSNTAKDIHEALMLLGN
GDLKLALTHPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKI
SLNGAKMLSDFFILYTKAPTHSPSVLIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKK
LQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDV
YIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKP
SVFLYEAGLLKPDLK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
ttgttagaaactttgcaattaaaccctgagcaactaaaagcggccaaggctttgaaaggg
tataatttagtgattgcgagcgctggcacaggaaagacttctacgattgtggggcgtatt
ttatatctgcttgataacggcatcaagcctgaagaaatcttgcttttgactttcaccaat
aaagcgagtaatgaaatgatcgctagggtggctaaatattccaagttaagctccaaaatt
gaagcgggcactttccatgcggtggcgtatcgctatttgaaagagcattaccccaattta
agcctaaagcaacctaaagaattaaaaaaacttttagaaagcattgtggatactaaaaac
gccatagatgacgataaaaagccctacacttcgcaacatctctacgccctctattctctt
tataccaacgctctaaaacaagaagattttagtgcatggctttctaataaaaaccctgaa
cacacgccatacgccgccttttatgaaaacattttagacgaatttgaaaacaccaaaaaa
aagcataattatattgactataacgacttactgctgttgtttaaacaagcgatgctagaa
agacctagcccttataaagaagtgctttgcgatgagtttcaagacactaaccccttacaa
gaatccattttagacgctatcagccctcccagtttgttttgcgtgggcgattacgatcag
agcatttacgcttttaatggggcggatatttctatcatttctaatttcactcaaaaatac
aaaaacgcccaggttttcacgctcaccaaaaactaccgctcttctaaagagattttagat
ctcgctaatcaagtgatacagcacaacgagcgcatttaccctaaaaatttagaagtggtg
aaatcagggcatttcaataagcccgcgcttttaaattacaacgacaatatcgcgcaatgc
caagacatcgctaaacgcattgtcatgcgaaaggattttaaagaagtggcagtgattttt
aggaataacgcgagcgcagatcaattagaagccgctttaagatcccacaatgtgccaagc
aaaagaaaagggagcacaagcttctttgaatccaaagaagtggcgttagcgttagatatt
tgcgcgctcatctttaaccctaaagacattatggcagcaatccatgttttaagccatatc
agcgatattggctctaacaccgctaaagacattcatgaggccttaatgcttttaggcaat
ggcgatctcaaactagccctaacccaccctaataaagaagccaaaatttacacgaagaaa
aaagaaatcacctctatggggctttttgaagaaatttttgctttagaaaacagctcaagg
tttaatagcgtgatagataaagcgtttcattcgcacccggtgttgatgcaccctaaaatc
tcactcaatggggctaaaatgcttagcgattttttcattctttataccaaagcccctact
cattcccctagcgttttaatcaaacacattttagaaagcgcgttttttcaaacctttaaa
acacgccttttaaaagagcgctccaaaaataaggacggctcttataacgaatttaaaaaa
ctccaagcgcaaaaacgcttcaatgaaaaaatggacttgctgagttctttggcgaaaaat
taccagaatttagggcgttttttaaacggcactttaataggctctagtgaagccacgcaa
ggcgagggtgtgaatctattaagcgtgcatgcttctaaaggcttggaatttaaagatgtt
tatattatcgatttaatggagggccgtttccctaaccacaagctcatgaataccggtggg
ggcattgaagaagagcggcggcttttttatgtcgctatcacaagggctaaggaaaattta
tggctttcttatgcaaaaaacgaattgagagaaaacgccaaacctaaagagcataagccc
tcggtgtttttgtatgaagcggggcttttgaaacccgatttaaaataa
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