KEGG   Helicobacter pylori 2018: hp2018_0508
Entry
hp2018_0508       CDS       T01914                                 
Symbol
virD4
Name
(GenBank) Type IV secretion system protein
  KO
K12090  cag pathogenicity island protein 5
Organism
hpw  Helicobacter pylori 2018
Module
hpw_M00564  Helicobacter pylori pathogenicity signature, cagA pathogenicity island
Brite
KEGG Orthology (KO) [BR:hpw00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:hpw02044]
    hp2018_0508 (virD4)
Secretion system [BR:hpw02044]
 Type IV secretion system
  Cag pathogenicity island (PAI) protein
   hp2018_0508 (virD4)
SSDB
Motif
Pfam: T4SS-DNA_transf TraG-D_C TrwB_AAD_bind Membra_charge F59B103_C RIC3
Other DBs
NCBI-ProteinID: ADZ51199
LinkDB
Position
complement(503140..505386)
AA seq 748 aa
MEDFLYNALYFIEDYKLVVIFSFIGLIALFFLYKFIKTQKKALKDKANQPQKKKSFKEII
IDGLKERVKTFGFWLQAILLLSYSFITSGLFFLILLGNFYDDNKLPESDDDLFDIWVYAI
QDFPAYYFKALTFSSLKIYGFNISLVVYSSILCSYIFITFFVWFLKYLTRTRDIGANKKV
DDLFGSASWETEEKMIKAKLITPNNKKRAFDKREVIVGRRGLGDFIAYAGQAFIGLIAPT
RSGKGVGFIMPNMINYPQNIVVFDPKADTMETCGKIREKRFNQKVFIYEPFSLKTHRFNP
FAYVDFGNDVVLTEDILSQIDTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFFS
NQARNLFVINCNIYRDLMWTKKGLEFVKRKKIIMPETPTMFFIGSMASGINLIDEDTNME
KVVSLMEFFGGEEDKSGDNLRALSPATRNMWNNFKTMGGARETYSSVQGVYTSAFAPYNN
AMIRNFTSANDFDFRRLRIDEVSIGVIANPKESTIVGPILELFFNVMIYSNLILPIHDPQ
CKRSCLMLMDEFTLCGYLETFVKAVGIMAEYNMRPAFVFQSKAQLENDPPLGYGRNGAKT
ILDNLSLNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRSIDDNTGKTNTSISNKERFLM
TPDELMTMGDELIILENTLKPIKCHKALYYDDPFFTDELIKVSPSLSKKYKLGKVPNQAT
FYDDLQAAKTRGELSYDKSLVPVGSSEL
NT seq 2247 nt   +upstreamnt  +downstreamnt
atggaagactttttgtataacgccttatacttcatagaggattataagttggttgttatt
tttagtttcatagggttaatagcgttatttttcctctacaaattcataaaaactcaaaaa
aaggctcttaaagataaagctaaccagcctcaaaagaaaaaaagctttaaagaaatcatt
atagatgggctgaaagaaagggttaaaacctttggcttttggttgcaagcgatactatta
ctatcctattcttttatcacatcagggttatttttcttgattctcttaggtaatttttat
gatgataataaattgcctgagagcgatgatgatctttttgatatatgggtctatgcgata
caagattttcctgcatactattttaaggcgctcacttttagctcgctcaagatttatggg
ttcaatatatccttagtcgtatatagttctattttatgctcttatatattcatcaccttt
tttgtgtggttcttaaaatacttaactcggactagagatataggagcgaataaaaaagtt
gatgatctctttggtagcgcgagttgggaaactgaagaaaaaatgatcaaagccaagctc
atcacacccaacaataaaaaacgtgcctttgacaaacgagaggttattgtaggcaggcgt
ggcttaggggattttatcgcttacgcaggacaggcgtttattggactcattgcccctact
aggagcggtaagggggtgggtttcatcatgcccaatatgatcaattatcctcaaaatatc
gttgtgtttgatcctaaagcggatacaatggaaacttgcgggaaaatcagagagaaacgc
ttcaaccaaaaagtgttcatctatgaacctttctccttaaaaacacaccgatttaatcct
ttcgcttatgtggattttggtaatgatgtggttttgactgaagacatactctctcaaatt
gacacacgcttaaaagggcatggcatggtggctagtggaggggatttttccactcaaatc
tttggattggctaagttggtgttccctgaaagacctaatgaaaaagatcctttttttagc
aatcaagcgcgaaacctctttgtcatcaattgcaatatttacagggatctcatgtggact
aaaaaggggcttgagtttgtcaaaagaaaaaaaatcatcatgcctgaaacccctacgatg
tttttcataggttctatggcaagcggaatcaacctgattgatgaagacacaaacatggaa
aaagtcgtgtctttaatggaattttttggaggtgaagaagataagagtggcgataatcta
agagcgcttagtcctgccactagaaacatgtggaataactttaagacaatgggtggcgct
agagaaacttatagctcggttcaaggggtatacacttcagcttttgctccttataataac
gcaatgattaggaatttcacgagcgctaatgattttgattttaggcgtttaaggatcgat
gaggtcagcattggcgtgatcgctaaccccaaagaaagcactattgttggaccgatatta
gagctgtttttcaacgtgatgatttatagcaaccttattctaccaatccatgatccacaa
tgcaaaagaagctgcttgatgctcatggacgaatttacgctctgtggctatttagagacc
tttgttaaagcggtagggatcatggcagaatacaacatgcgccctgcttttgtgtttcaa
agtaaggcgcaattagaaaatgatcccccacttggttatggtaggaatggcgctaagact
attttagacaacctttctttgaatatgtattatgggatcaacaacgataactactatgaa
cattttgaaaagctttctaaagtgttagggaaatacacaaggcaagatgtgagccgaagc
attgatgataatacgggtaagaccaacacttccatcagcaacaaggagcggtttttgatg
acccctgatgaattgatgactatgggcgatgagcttatcattttagaaaacacgctcaaa
cccatcaaatgccacaaggcgctttactatgatgatcccttcttcaccgatgagctcatt
aaggtgagtccaagcttgagcaagaaatacaaattggggaaagtgcctaatcaagcaaca
ttttatgatgacttgcaagccgctaaaaccagaggcgaattgagctatgacaagtcttta
gtgcctgtgggttcaagcgaactgtga

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