Helicobacter pylori 83: HMPREF0462_0141
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Entry
HMPREF0462_0141 CDS
T01915
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hpx
Helicobacter pylori 83
Pathway
hpx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HMPREF0462_0141 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpx03021
]
HMPREF0462_0141 (rpoD)
Transcription machinery [BR:
hpx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HMPREF0462_0141 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
MCR_beta_N
WYL_3
Sigma70_r4_2
HTH_25
SieB
Motif
Other DBs
NCBI-ProteinID:
AEE69746
UniProt:
F4D374
LinkDB
All DBs
Position
complement(130247..132271)
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AA seq
674 aa
AA seq
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MECPMKKKANEEKAPKKNKTEATQENKAKENKIKESKIKETKTKESKVKEIKAKEPVPVK
KLSFNEALEELFANSLSDCVSYESIIQISMKVPTLAQVKKIKELCQKYQKKLVSSSEYAK
KLNAIDKIKKTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKD
EEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDENSVSD
SKKDDDSEEDEENEERKKVVSEKDRKRVEKVQESFKALDKAKKEWLKALEAPVDEKEDEL
VRLLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFND
TLIANHKKILANITNMTKENIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLDPNKLKE
ILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFE
HEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDL
EVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDL
KAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLR
SPQYGRILRNYLRI
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggagtgtccaatgaaaaagaaagctaacgaagaaaaagccccaaaaaaaaacaaaaca
gaagccacacaagaaaataaagccaaagaaaacaaaattaaagagagcaaaattaaagaa
actaaaaccaaagaaagcaaagtcaaagaaattaaagcgaaagaacctgttcctgttaaa
aagcttagttttaatgaagcgttagaagaattgttcgctaattccttaagcgattgcgtt
tcttatgagtctatcattcaaatcagcatgaaagtccccactctagcccaagtcaaaaaa
atcaaagaattgtgccaaaaataccaaaagaaattagtcagttcttcagaatacgctaaa
aaactcaatgcgattgacaagattaaaaaaactgaagaaaagcaaaaagttttagatgaa
gaattagaagatggctatgactttttgaaagaaaaggattttttagagtggagcaggagc
gatagcccggtgcgcatgtatttgcgcgaaatgggggatataaagcttttaagcaaagat
gaagagattgaattgagcaagcaaatccgcttgggcgaagacattattttagacgcgatt
tgctcggtgccgtatttgattgattttatctatgcgtataaagacgctttaatcaatcgt
gaaagaagggttaaagagctttttaggagctttgatgatgatgaaaatagcgtgagcgat
tctaaaaaagatgatgacagcgaagaagatgaagaaaacgaagaaaggaaaaaagtcgtt
tctgaaaaagacaggaagcgtgtagaaaaggttcaagaaagctttaaagccctagataag
gctaaaaaagaatggctcaaagcccttgaagcccctgtagatgaaaaagaagatgagcta
gtgcgtttattgaccctagcttacaaacgccaaacgctcaaagacagactctatgactta
gagcctactagcaaactgattaatgaattagtcaaaacgatggaaaccactttaaaaagc
ggcgatgggtttgaaaaagagttgaaacgcttggaatacaaactgcccttattcaatgac
accctaatcgctaaccataaaaaaatccttgccaatatcactaacatgactaaagagaac
attatcgctcaagtgccagaagcgactatggtgagcgtgtatatggatcttaaaaagctt
tttttgactaaagaagcgagcgaagagggttttgatttagaccccaacaagctaaaagaa
attttagagcaaatcaaaagagggaaattgatttccgatcgcgctaaaaacaaaatggct
aaatccaatttaaggttggtggtgagcatcgctaagcgattcacgagcagaggcttgcca
ttcttggatttgattcaagagggtaatattggcttgatgaaagcggtggataagtttgag
catgaaaagggcttcaagttttctacctatgcgacctggtggatcaaacaagctatcagc
agagccatagccgatcaagcccgcactattcgcatccccattcacatgattgacaccatt
aatcgcatcaataaagtcatgcgcaaacacattcaagaaaacggcaaagagcctgatttg
gaagtggtggctgaagaagtggggctttcgttagataaagtgaagaatgtgattaaggtt
accaaagagcctatcagtttggaaactccagtcggcaatgatgatgacggcaaatttggg
gatttcgtggaagataaaaatatcgttagctccattgatcacatcatgcgcgaagattta
aaagcgcaaattgaaagcgttttggatcagttgaatgagcgagaaaaagcggtgattcgc
atgcgttttgggcttttagacgatgaaagtgatcgcactttagaagaaattggcaaggaa
ttgaatgttactagagaaagggtgcgccagattgaaagctctgcgattaaaaaattgaga
agtccgcaatacgggcgcattttaagaaactatttgcgcatttga
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