Helicobacter pylori 83: HMPREF0462_0301
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Entry
HMPREF0462_0301 CDS
T01915
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpx
Helicobacter pylori 83
Pathway
hpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0462_0301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpx03019
]
HMPREF0462_0301
03009 Ribosome biogenesis [BR:
hpx03009
]
HMPREF0462_0301
Enzymes [BR:
hpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMPREF0462_0301
Messenger RNA biogenesis [BR:
hpx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF0462_0301
Ribosome biogenesis [BR:
hpx03009
]
Prokaryotic type
rRNA helicases
HMPREF0462_0301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
AAA_30
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AEE69906
UniProt:
F4D440
LinkDB
All DBs
Position
288779..290257
Genome browser
AA seq
492 aa
AA seq
DB search
MEFNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
EHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKTSNKKTHQHEQTRSFKKGQHKDRHP
KTNHHSKKPKRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaatcaaccaccactccctacagaaattgatgatgacgcttaccataagccg
agttttaatgatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggtttc
acttccccaagccctattcaagaaaaggccattccggctgttttgcaaggccgagatgtc
atcgcacaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcccattatcaac
aaccttaaaaacaaccacaccatagaggccttagtgatcacgcctactagagaattagcc
atgcaaattagcgatgagattttcaaattgggcaaacacactaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaaacaatgcgaatttattaagaaaaatccccaagtg
atgatcgctacaccaggaaggttgttggatcatttaaaaaacgaacgcatccataaattt
gtgcctaaagtggtcgttttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactacctccctagcgaagcacagattttgcttttttcagcc
acgatgccagagccgattaaaagactagcggataagattttagaaaaccctattaaaatc
catatcgccccttctaatatcactaacactgacatcacccaacgcttttatgtgatcaat
gagcatgagagggctgaagcgatcatgcgccttttagacacccaagcgcccaaaaagagc
attgttttcacgcgcaccaaaaaagaagccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgccttgcatggggatatggatcaaagggatcggcgcgcttctatc
atggcgtttaaaaaaaatgacgctgatgtgttggtggctacagatgtggcgagccgtggg
ctagacattagcggtgtaagccatgtgttcaattaccacttgcccctaaataccgagagc
tatatccatcgcatcgggagaaccgggcgagcgggcaaaaaaggcatggcgatcacttta
gtaacccccttagaatacaaagagcttttacgcatgcaaaaagaaattgattcagagatt
gaactttttgagatccccaccattaacgaaaaccagatcatcaaaaccttacatgacgct
aaagtgtctgaagggatcatcagtctttatgaacagcttaccgaaatctttgagccgtct
caattggttttaaaacttttgagtttgcagtttgaaaccagtaaaattggcttaaaccag
caagaaattgatgcgattcaaaaccctaaagaaaaaacgccaaaaacctctaacaaaaaa
acgcaccagcatgagcaaacgcgttctttcaaaaagggtcagcacaaagacagacaccct
aaaacaaaccaccattctaaaaaacccaaacgccgttaa
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