Helicobacter pylori 83: HMPREF0462_0403
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Entry
HMPREF0462_0403 CDS
T01915
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpx
Helicobacter pylori 83
Pathway
hpx03410
Base excision repair
hpx03430
Mismatch repair
hpx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF0462_0403 (recJ)
03430 Mismatch repair
HMPREF0462_0403 (recJ)
03440 Homologous recombination
HMPREF0462_0403 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpx03400
]
HMPREF0462_0403 (recJ)
DNA repair and recombination proteins [BR:
hpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HMPREF0462_0403 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HMPREF0462_0403 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF0462_0403 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
GLUCM-like_C
Fe-S_biosyn
Motif
Other DBs
NCBI-ProteinID:
AEE70008
UniProt:
F4D4T3
LinkDB
All DBs
Position
complement(385863..387413)
Genome browser
AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERVASIAYKEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGV
ISSTIMAKFFESLNYKHVRIVIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEAARF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVLRKHS
LKASDISFSIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVF
EEAFKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSGRSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKVLPFCEKEPPLTLT
LKDIDRELLEIIEAGEPYGQENPEPLFQVQNLEVIEEKIIKESHQVLRFKDKECVKEAIY
FNTERFLKAGEKVSAIFSVELDEYSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcttctatcgcttataaggaa
aaagggtttcctagcccctttttatttaaagacttgaaaaaagccgcactcaaaatcata
gaagccatgcgcgcaaacacagagattttagtggtgggcgattatgacgctgacggcgtg
attagctctactatcatggcaaaattctttgaaagcctgaattataagcatgttcgcatt
gtaatccctaatcgcttcattgatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataacgggattagcgcctttgaagccgcgcgattt
tgcaaagaaaaaaactacacccttattattacggatcaccattgcttacaccatgatgaa
gtcccagacgcttatgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtggcgttttatttgtgctatggcatccaccagcttttagga
aaagaaaaaagccattctagcgagttgttgtgcttggcgggcgtggcgactattgctgac
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggagcgatggggtttttgcgccaaagagaagttttaagaaaacactct
ttaaaagcgagcgatatttctttcagtatcgctcccttaatcaactccgcagggcgcatg
caagatgcaaaaatggctttagattttttaagtgcgaataattttcaagatggctatttt
ttgtatgaacgcttgaaagcatgcaatatgaagcgtaaaatgatccaacagcaggttttt
gaagaggcttttaagcatgcgatggttggcgaaaaaattattgtcgcttttaaggatgat
tggcatgagggcgtgttagggattgtggcttcaaaattagtggaagccactcaaaagcca
agcctggtttttacctttaaggaaggggtgtataaaggaagtggtcgcagctcttcaaat
attgatctcattgacgctttgaatggggtttcttctttgttgctcggctatggggggcat
aggcaagcttgcgggctgagcgttggaaaaaacaatatcatctcgctctttgaaacttta
gaaaattttgattttaaagtcctacctttttgtgaaaaagaaccccctttaacgctcaca
ttaaaagacattgacagagagcttttagagattatagaagcgggcgaaccttatgggcaa
gaaaacccagagccactctttcaggtgcaaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccaggttttgcgttttaaggataaagaatgcgtcaaagaggctatttat
tttaacactgagcggtttttgaaagcgggcgaaaaggtgagcgcgatttttagcgtggaa
ttagatgagtattctaatgagcctaaaatgtttgttaaaagtttgttgtag
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