Helicobacter pylori 83: HMPREF0462_0866
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Entry
HMPREF0462_0866 CDS
T01915
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hpx
Helicobacter pylori 83
Pathway
hpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0462_0866 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpx03021
]
HMPREF0462_0866 (rho)
03019 Messenger RNA biogenesis [BR:
hpx03019
]
HMPREF0462_0866 (rho)
Transcription machinery [BR:
hpx03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HMPREF0462_0866 (rho)
Messenger RNA biogenesis [BR:
hpx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HMPREF0462_0866 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA_28
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AEE70471
UniProt:
F4D646
LinkDB
All DBs
Position
852516..853832
Genome browser
AA seq
438 aa
AA seq
DB search
MNENAPTHKSPHKVKTHTPVSGYHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEI
LKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVT
GQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRM
LDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQR
SVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSS
GKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNS
EIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYS
KMQQTKDNEEFLNLMNEK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaacgcgcctacgcataaaagtccgcacaaagtcaaaacacacacgccagtg
agcggttatcacattgaagatttacgcacctaccctactgaaaagcttttagaaatcgct
aacaagctcaaagtggaaaacccccaagaattcaaacgacaagacttgatgtttgaaatt
ttaaaaacccaagttacgcaaggcggatatattctttttaccgggattttagaaatcatg
cctgatggctatggctttttaagagggtttgatgggagtttttcagatgggcataatgac
acttatgtcagcccttctcaaatcaggcgttttgctttaaggaatggcgatattgttacc
ggtcaagtgcgatcccccaaagaccaggaaaaatactacgcccttttaaaaatagaagcc
atcaattatttgccttcagatgagattaaaaaccgccctttgtttgacaatctaacccct
ctattccctgatgaacaaatcaaattagaatacgaacccactaaagttaccggcagaatg
ctagatttattcagccctgtggggaagggtcaaagggctttgatcgtcgcgccaccaagg
actgggaaaacggagttgatgaaagaactcgcccaaggcattacttctaaccaccctgaa
gtggagctgattatccttttagtggatgagcgccctgaagaagttacggatatgcaacga
agcgttaaaggtcaagtttttagctccacttttgatttgcccgcaaacaaccacataaga
atcgctgagttggtgctagaaagggcgaaaaggcgagtggaaatgggcaaagatgtagtg
gttttactagattctatcacccgtttagccagagcgtataacgctgtaacgccttcaagc
ggtaaggttttaagtgggggcgtggatgcgaacgccttgcacaggcccaagcgctttttt
ggagccgcaaggaatattgaagaaggcgggagcttgacgattatcgctactgcattgatt
gaaacgggatctagaatggatgaggtgatttttgaagaatttaaaggcaccgggaatagc
gaaatcgttttagcgaggaatattgcagacaggcgcatttacccggcctttgatatttta
aaatccggcacacgaaaagataatatcttgcttggcaaagaccgcttgactaaagtgtgg
gttttaaggaatgtgatgcaacaaatggatgatatagaagccttaagctttgtgtattct
aaaatgcaacaaactaaggacaatgaagaatttttaaatttaatgaatgaaaaataa
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