Helicobacter pylori 83: HMPREF0462_1209
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Entry
HMPREF0462_1209 CDS
T01915
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hpx
Helicobacter pylori 83
Pathway
hpx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0462_1209 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpx03021
]
HMPREF0462_1209 (rpoB)
03400 DNA repair and recombination proteins [BR:
hpx03400
]
HMPREF0462_1209 (rpoB)
Enzymes [BR:
hpx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0462_1209 (rpoB)
Transcription machinery [BR:
hpx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0462_1209 (rpoB)
DNA repair and recombination proteins [BR:
hpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0462_1209 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
DUF7210
Motif
Other DBs
NCBI-ProteinID:
AEE70813
UniProt:
F4D2H9
LinkDB
All DBs
Position
complement(1220049..1228721)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYVGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLKSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDIFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHVLESCSDEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMSAIAQDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNSDQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIVQDVYAK
EKGAIKYYVLEANHLERTHGIKKGDIVSEKGLFAVIADDNGREAARHYIARGSEILIDDN
SEVSANSVISKPTTNTFKMIATWDPYNTPIIADFKGKVGFVDIIVGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGVNGEEVRYFLEPKTSIAISDGVSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRPMDYFV
DKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRTLEDDSKF
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccaaca
gatttagaagtccctaatttattattattacaacgagacagctatgattctttcttgtat
tctaaagatggtaaagagagcgggattgaaaaggtttttaaatccattttccctatccaa
gatgagcataaccgcatcactttagaatacgtaggctgtgaatttggcaagtctaaatac
actgttagagaagcgatggagaggggcattacctactctatcccccttaaaattaaagtg
cgcttgatcttgtgggaaaaagataccaaaagtggcgaaaagaacggcattaaggatatt
aaagaacaaagcattttcattcgtgagatccctttgatgacggaacgcacttcatttatt
atcaatggggtggagcgcgtggttgtcaatcaactccacagaagccccggtgtgattttc
aaagaagaagagtccagcacttctttaaacaagctcatttacacagggcaaatcatccct
gataggggttcgtggttgtattttgaatacgattctaaagatgttttatacgctcgtatc
aacaaacgccgtaaagtgcctgtgactattttattcagggcgatggattatcaaaaacaa
gacattatcaaaatgttctacccgcttgttaaagtgcgttatgaaaacgataaatatttg
attccgtttgcttcattagacgctaatcaaagaatggaatttgacttgaaagatcctcaa
ggcaaggttattcttttagcgggtaaaaagctcacttcaagaaagattaaagagcttaaa
gaaaaccatttagaatgggtggaataccctatggatattttactcaatcgtcatttagct
gagccggttatggtagggaaagaagtcttattggacatgctcactcagctagataaaaac
agattagaaaaaatccacgatttaggcgtgcaagaatttgtgatcatcaacgatctagcg
ttagggcatgacgcttccattatccattctttttcagccgattctgagtctttgaaatta
ctcaagcaaactgaaaaaattgatgatgaaaacgctctagcggcgattcgtatccataag
gttatgaagccaggcgatcctgttacgactgaagtggctaagcagtttgtcaaaaaactt
ttctttgatcctgaacgctatgatttgaccatggttggccgtatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacattacgactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaagatcaaaaacaatcagggcaagattgatgatagagatcacttg
ggtaatcgtaggattagggcggtaggggaattactagccaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaagctcactaccatgagcgggacttttgattcg
ctcatgccccatgacttggtcaattctaaaatgatcacaagcacgatcatggaatttttc
atgggtggtcagctctcgcaatttatggatcaaaccaaccccttgagtgaggttacacac
aaacgccgcctttcagcactcggtgaagggggattggtgaaagacagagtagggtttgaa
gctagggatgtgcatcccacacattatggccgaatttgccccattgaaaccccagaaggt
caaaatatcggtttgatcaacaccctttccactttcacaagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggcaaggtagtgggtgagacgatttatttg
accgctattcaagaagacagccacatcatcgctcctgcaagcactcccattgatgaagag
ggcaatattttaggcgatttgattgaaacgcgcgtggaaggcgagattgttttaaacgaa
aaaagcaaagtaaccttaatggatttaagctctagcatgctagtaggggtcgccgcatcg
ctcattcctttcttagagcatgatgacgccaaccgcgccttaatggggactaacatgcag
cgtcaagcggtgccgttattaaaaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaagccaatcgcgcaggtgttgtagaaaaa
attgattctaaaaatatttatattttaggcgaaggcaaagaagaagcctatattgatgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagtttcaatcaagtccctatt
gttaaagtgggcgataaagtggaagccggacaaatcatcgctgatggtcctagcatggat
agaggcgagttggcgttagggaaaaatgtgcgcgtagcgttcatgccttggaatggttat
aactttgaagacgccatcgtggtgagtgagcgcatcactaaagacgatattttcacttcc
acccacatttatgaaaaagaagtggatgctagggagcttaagcatggcgtggaagaattt
accgctgatattcctgatgtgaaagaagaagcgctcgctcatcttgatgaaagcgggatc
gttaaagtgggcacttatgtgagcgctggcatgattttagtgggtaagacttctcctaaa
ggcgagattaaaagcacgcctgaagagcggcttttaagggctatttttggggataaagcc
gggcatgtggtcaataagagtttgtattgccctccaagtttggaaggcacggtgattgat
gtgaaagtcttcactaaaaaaggctatgagaaagacgcgcgggttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgaccgcttgaccatgctcaatagagaa
gaattgttgcgcgttagctcgctcctttctcaagcgattttagaagagcctttcagccat
aatggcaaggactataaagagggcgatcaaatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggctagtttggtgaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaacaatttcttagagcaaaaaaaagtcttgggcgaagagcatgaagaaaag
ctttctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcggatatgccttataccgctgatggcgag
cctgtagatattgtcttaaaccctttaggcgtgccaagccgtatgaatattgggcagatt
ttagaaatgcatttaggcttagtggggaaagaatttgggaaacaaatcgctagcatgcta
gaggataaaaccaaagattttgccaaagaattgcgtgctaaaatgctagaaatcgctaac
gccattaatgaaaaagaccccttgacaatccatgttcttgagagttgttctgatgaagag
cttttggaatacgcaaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttataagctatttgaattagccaagatcgctatggatggc
aaaatggatctgtatgatgggcgcacaggcgaaaaaatgagggagcgcgtgaatgtgggc
tatatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcaca
ggcccttatagcttggtaacgcaccagcctgttgggggtaaagctctctttgggggtcaa
aggtttggggaaatggaagtgtgggcgctagaagcttatggcgcagcacacactctaaaa
gaaatgctcaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggtgagagtgaaatccctgagactttctatgttttgactaaa
gaattacaatcgctcgctttggatattaatatttttggggacgatgtggatgaagatgga
gcgcctaaacccattgtcattaaagaagatgacaggcctaaagactttagctctttccag
ctcacgctagccagccctgaaaaaatccattcttggagttatggggaagtcaaaaagcca
gaaacgatcaattatcgcacattaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccccactaaagattatgaatgcttgtgtggtaaatacaaaaaacctcgcttcaaa
gacattggcacatgcgaaaaatgcggcgtggcgatcacgcactccaaagtcaggcgtttt
agaatggggcatattgaattagccactcctgtagcgcatatctggtatgtcaattcctta
cctagccgtatcggcacgcttttaggcgttaagatgaaagacttagagcgcgtgttgtat
tatgaagcttatatcgttaaagaaccaggcgaagccgcttatgataatgaaggcactaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagacaggggctttgtagcgcaaatgggcggtgaagcgatcaaggatctgctagaagaa
attgatttgatcaccttattgcagagtttgaaagaagaagtgaaagacaccaattccgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggt
aacaggcctgaatggatgatgctcacggttttaccagtattgccaccggatttaaggcct
ttagtcgcgctagatggcgggaagtttgcggtcagcgatgtgaatgaattgtatcgtcgt
gtcatcaatcgtaaccaacgcttgaaacgcctaatggagcttggggcgccagaaatcatt
gtgcgcaatgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgc
agcaccaatgcggttaaaggggctaacaaacgccctttaaaatcgctcagtgaaatcatt
aaaggcaagcaagggcgtttcaggcaaaaccttttaggcaagcgcgtggatttttcaggc
agaagcgtgattgtggttggaccaaacctcaagatggacgagtgcggattgcctaaaaac
atggcgttagaactcttcaaaccgcatttgttatccaagcttgaagagagaggctatgcc
accacgctcaaacaggctaaacgcatgattgagcaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgctactcaaccgcgctcctaccttgcacaag
caatccattcaagcgttccatccaaagcttattgacggcaaagcgatccaattgcacccg
ttagtgtgttcagcgttcaacgccgattttgatggggatcaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctgatgctaagctctatgaatatcctt
ttgcccgctagcggtaaagctgtggccattcctagccaagatatggttttagggctttat
tatctttctttagaaaagagcggggtcaagggcgagcataaacttttttctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggtttta
gatcaaggaaatattatcgctacgagcgcggggcgcatgatcattaagtccattttgcct
gattttatccctactgatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtcggtggtatcggtattaccgcaacctttttggataattta
aaaacgcttggctttaggtatgcaactaaggctggtatttctatctctatggaggatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaagtagaggttaaaaaaatc
cagcaacaatacgatcaagggctgctcactgaccaggagcgttacaataagatcattgac
acttggactgaagtcaatgacaaaatgagtaaagaaatgatgagcgctatcgcgcaagat
aaagagggctttaactctatttatatgatggcagatagcggcgcaaggggtagtgcggcg
caaatccgtcagctttcagcgatgaggggtcttatgacaaagccagatggcagtatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggcgctagaaagggattagcggatacagcgttaaaaacagccaatgcggggtat
ttgacaagaaaactcattgatgtttcgcaaaatgtcaaggtggtgtctgatgattgcggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcccattacgaatgaa
atcttgctttatgcggacactttgattgatgaagagggtgctaaaaaggtggttgaagcc
gggattaaatccattacgatccgcaccccagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctatggtttgaatttgggcgaaggcaagatgagttatccgggtgaagcggtg
ggcgtggtagccgcgcaatctattggagagcctggaactcagcttactttaaggactttc
catgtgggcgggacagcgagcaggagtcaggatgagcgcgaaattgtagcgagcaaagaa
ggttttgtgcgtttctacaaccttaggacttacacgaataaagagggtaaaaacattatc
gctaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaagtcgttgtgagcgtgaaaaatagcgat
caagaagctaaatttgttttaagaagaagcgatattgtcaagccaagcgaattggccggc
gttggcggtaagattgaggggaaagtgtatttgccttatgctagtgggcataaggtgcat
aaggggggaagtatcgctgatattatccaagagggttggaatgtgcctaatcgcatccct
tatgcgagcgaattgctagtcaaggataatgaccctattgtgcaagatgtgtatgccaaa
gaaaaaggtgcaatcaagtactatgttttagaggccaatcatttagagcgcacccatggg
atcaaaaagggcgatattgtgagcgaaaaaggcttgtttgcggtgatagccgatgataat
ggtagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgagcgctaatagcgtgatttctaaacccacgactaacactttcaaaatgatt
gccacatgggatccttacaacacccctatcattgcggactttaaaggtaaggtgggtttt
gtggatattatcgtaggggttacggtcgctgaaaaagaagacgaaaataccggtattaca
agcttagtggtgaatgattacattccaagcggatacaaaccaagcttgtttttagagggg
gttaatggcgaagaagtgcgttatttcctagagccaaaaacttctatcgctattagcgat
ggcgttagcgtggaacaggccgaagtgttagcgaaaatccctaaagcgaccgttaaatcc
agggatattaccgggggtctcccaagggtttcggaactctttgaagcgagaaaacccaag
cctaaagatgtggcgatcctttctgaagttgatgggatagtgagttttggcaagcccatt
cgcaataaagaacacatcatcgtaacttctaaagatggccgtcccatggattattttgtg
gataagggcaagcaaattttagtgcatgccgatgaatttgtgcatgcgggagaagcgatg
acggatggagtggtttcaagccatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtatcgcaggcaaggggtaagtattgcggac
aagcacattgaaatcattgtctctcaaatgctaaggcaagtgcgtattttagacagcggg
gatagcaagtttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagccagcgattgctgaaccggtgcttttagggatcact
agagcggctattgggagcgatagcatcatctcagcggcctctttccaagaaacgactaaa
gttttaacagaagccagtatcgctatgaaaaaagactttttagaggatttgaaagagaat
gtggtgttggggaggatgatccctgtgggaacaggcatgtataagaataaaaaaatcgtg
ctaagaacgcttgaagatgactctaaattttga
DBGET
integrated database retrieval system
