Helicobacter pylori 83: HMPREF0462_1461
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Entry
HMPREF0462_1461 CDS
T01915
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpx
Helicobacter pylori 83
Pathway
hpx03420
Nucleotide excision repair
hpx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF0462_1461
03430 Mismatch repair
HMPREF0462_1461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpx03400
]
HMPREF0462_1461
Enzymes [BR:
hpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0462_1461
DNA repair and recombination proteins [BR:
hpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF0462_1461
MMR (mismatch excision repair)
Other MMR factors
HMPREF0462_1461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_11
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
AEE71065
UniProt:
F4D3V7
LinkDB
All DBs
Position
complement(1455486..1457531)
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AA seq
681 aa
AA seq
DB search
MDFEKSILDNLNEVQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGTCGVPSENTLT
LTFTNKASKEMQERALKLLKNQTLIPPLLCTFHRFGLLFLRQHMSLLKRACDFSVLDSDE
VKTLCKQLKISSFRASISQIKNGMIDLSMQDSECHKAYELYQNALKKDNLVDFDDLLFLS
LKILQDNETTAKETSERYHYIMVDEYQDTNALQLEFLKKLSFTHHNLCVVGDDDQSIYGF
RGADISNILNFSKHFKGAKVVKLETNYRSSAEILACANSLISHNQHRHKKTLQSFKGSHK
SVVCKEYLTQKEESLDVAYQIKALLKKGENLENIAILYRLNGLSRSIEESLNALNIPYRL
IGAVGFYERAEVKDALAFMHLAAKKDDRFFIKRVLNKPSRGLGKITQELIFSLLDGEGLN
LEEALKLGVFKGKLNPKNEHALNKFIAMIGRLREAFEISVEEFCARFLEETNLLKSYEKE
DNYEEREGFVKELLSLVKEHFKTNPTHSLLDFLNESVLDTHNTENAQKVSCMSVHMSKGL
EFKHVFVIGLEEGFFPHRGFNQESDLEEERRLAYVAITRAKEGLQLSYVQERSYFGRKIS
CSPSVFLEEAELLKQDNPPKQDHKKDVPIKVGDLIRHKLFGTGRVLGVEKGLSGLCLKIN
CGGNVYDKISAKFVEKVDNGF
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggattttgaaaaaagcattttagacaatttaaacgaagtgcaaaaaatcgccgcaagc
cacattcaagggcctttgctgattttagcgggagctgggagcggtaagactaagacttta
acgagccgtttagcgtatttgattggcacttgtggcgtgcctagcgagaacactttaacg
ctcactttcaccaataaagcgagcaaagaaatgcaagaaagggctttgaaattgttgaaa
aaccaaacccttatcccccccttgctttgcactttccatcgttttggtttgctgttttta
aggcaacacatgagccttttaaaaagagcgtgcgatttttcggtgttagatagcgatgag
gtaaaaacgctgtgcaaacagctcaaaatttcaagctttagagccagtatttctcaaatc
aaaaacggcatgattgatttgagcatgcaagatagcgaatgtcataaagcgtatgaactt
tatcaaaacgcgcttaaaaaagacaatttagtggattttgacgatttgctttttttaagc
cttaagattttacaagataatgaaaccaccgccaaagaaactagcgagcgctaccattac
attatggtagatgaatatcaagacacgaacgccttgcaattagaatttttaaaaaaattg
agtttcacgcaccataatttgtgcgtggtgggcgatgatgatcagagcatttatggtttt
aggggggctgatatttctaacattttaaatttttccaagcattttaaaggggctaaggtg
gtgaaattagaaaccaactaccgctctagcgctgaaattttagcttgcgctaactccctg
attagccataaccaacaccgccacaaaaaaacgcttcaaagttttaagggatcgcataaa
agcgtggtttgtaaagaatatttgacgcaaaaagaagagagcttagatgtggcttatcaa
atcaaagcccttttaaagaagggcgaaaatttagaaaatatcgctattttgtatcgctta
aacgggcttagccgcagcattgaagagagtttgaacgctttgaatatcccctataggctt
attggagcggtgggtttctatgaaagagcggaggttaaagacgctttggcgttcatgcat
ttagcggctaaaaaagacgatcgcttttttattaagcgcgttttaaacaagccctcaaga
ggccttggcaagatcactcaagagttgattttttctcttttagatggtgagggtttgaat
ttagaagaagcgctaaaactgggggtgtttaaaggcaaattaaaccctaaaaacgaacac
gctttgaataaatttatcgctatgatagggcgtttgagggaggcttttgaaatttcagta
gaggagttttgcgctcggtttttagaagagactaaccttttaaaaagctatgaaaaagaa
gacaattacgaagaaagagagggttttgttaaagagcttttaagcttagtgaaagagcat
tttaaaactaaccccacgcattctttactggattttttgaatgaaagcgttttagatacc
cataatacagaaaacgcgcaaaaagtgagttgcatgagcgtgcatatgagtaaggggtta
gagtttaagcatgtgtttgtgattgggttagaagaagggtttttcccgcatagggggttc
aatcaagaaagcgatttagaagaagaaaggcgcttggcttacgtagcgatcactagggct
aaagaaggattgcaactctcttatgttcaagagcgttcgtattttgggaggaaaatttct
tgctcgccctctgtgtttttagaagaggctgagttgctcaagcaagacaacccccctaaa
caggatcacaaaaaagatgtgcccattaaagtgggggatttgatcaggcataaacttttt
ggcaccggtagggttttaggcgtagaaaaaggcttgagcggtttgtgcttgaaaatcaat
tgcggagggaatgtctatgataaaatctcagcaaaatttgtagaaaaagtggataacggg
ttttga
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