Helicobacter pylori 26695: HP_1213
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Entry
HP_1213 CDS
T00008
Name
(GenBank) polynucleotide phosphorylase (pnp)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hpy
Helicobacter pylori 26695
Pathway
hpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HP_1213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpy03019
]
HP_1213
03016 Transfer RNA biogenesis [BR:
hpy03016
]
HP_1213
Enzymes [BR:
hpy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HP_1213
Messenger RNA biogenesis [BR:
hpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HP_1213
Transfer RNA biogenesis [BR:
hpy03016
]
Prokaryotic type
tRNA degradation factors
HP_1213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
Motif
Other DBs
NCBI-ProteinID:
AAD08258
UniProt:
O25812
LinkDB
All DBs
Position
complement(1288538..1290604)
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AA seq
688 aa
AA seq
DB search
MDFITINSSNKTEEFALKQVAKQATSSLLYRLGKTIILASVCVEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASAALFLAHIAPIKSVSACRIARMDNEFIINPSASLLNQSSLDLFVSGTKE
SLNMIEMRSLGQKLNALEEPLMLEALELAQKSLEETCTLYEEIFTPHQNELFFKESQGIV
FNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVK
KTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLEILYQALLQAKEARKHILKIMHEAKE
KIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDK
CQVVLKEGDSIRCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcaattctagtaacaaaaccgaagagttcgctctcaaacaagtg
gccaaacaagccaccagctctcttttataccgattaggaaaaaccattattttagcgagc
gtgtgcgtggaaagagagcctgtgagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggaaagatcccgggcggttttgttaaaagagaaggcagggcg
caagattttgaaatcttaacctctaggctcatagacaggactttacgccctttattccct
aaagactaccgctaccctacacagatcactttaatggttttaagccatgatattgaaaat
gacttgcaggtttctgctttaaacgccgcttcagccgctctctttttggcccatatcgct
cctattaaaagcgtgagcgcttgcaggatcgctaggatggataacgaatttatcattaac
cctagcgcaagccttttgaatcaatccagtttggatttgttcgtgtctggaacgaaagag
agtttgaacatgatagaaatgcgctctttggggcaaaaattgaacgctttagaagagcct
ttaatgttagaagctttagaattggctcaaaaaagtttggaagaaacttgcacgctttat
gaagagattttcacgccccaccaaaacgagctgtttttcaaagagagccaaggaatagtc
tttaatgaaaggctgttagatttattgaaaaatcagtattttgatgaaatcatcaaaggc
attgaaagttctgctttgagcgagcgagaaaatgttttcaatgaaattgccagaaaaatc
agtgaagcccactcagaattcagtttagaagaaattgaattgtctttagaaaaagtgaaa
aagactgagataagacgcatgatcattaaggataaaatccgcccggataagcgcgcgtta
gaagaagtgcggcccattttgatagagagcgatttgctccctatggcgcatagctccatt
ttattcactagggggcaaactcaaagcttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaagctcccattaaagagcgcttcatgtttcat
tataatttccctcctttctgcgtgggcgaagcgagttctattggcgcggcttcaaggcgt
gaattagggcatgggaatttggctaaaagagccttagaaacgagcattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcaggctctttagccctttatgcaagcggtgtggaaatttacgatttagtcgct
ggggtggctatgggcatggtgagcgaagggcaagatcacgctattttaagcgatattagc
ggcttagaagacgcagaaggcgatatggattttaagattgctgggaatttagaaggcatt
acggccatgcaaatggataccaaaatgagcggtatcaagctagaaattttataccaagcc
ttactccaagccaaagaagcacggaaacatattttaaaaatcatgcatgaagcgaaagaa
aagattgtgatcaatttttcccatttgcccacaacggagatttttaatgtcgcacccgat
aaaattgtagaaattatcggtcaaggggggcgtgtgattaaagagatagtagaaaagttt
gaagttaaaattgatttgaacaaaccgagcggtgaagtgaaaatcatggggaataaagag
cgcgttttaaagactaaggaatttattttaaactacttgcattctttagatcaagaattg
gagcaatacgctattgatgaggtattagaagctcaagtgaaacgaatcgtggattttggg
gcgtttttaagcttgcctaaggggggcgaaggcttgttaagaaagcaaaacatggacaag
tgtcaagtggttttaaaagaaggcgatagcatcaggtgtagggtgattagcttcaataag
ggtaaaatcgctttagatttggcttaa
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