Helicobacter pylori 26695: HP_1248
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Entry
HP_1248 CDS
T00008
Name
(GenBank) virulence associated protein homolog (vacB)
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hpy
Helicobacter pylori 26695
Pathway
hpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HP_1248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpy03019
]
HP_1248
03016 Transfer RNA biogenesis [BR:
hpy03016
]
HP_1248
Enzymes [BR:
hpy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HP_1248
Messenger RNA biogenesis [BR:
hpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HP_1248
Transfer RNA biogenesis [BR:
hpy03016
]
Prokaryotic type
tRNA degradation factors
HP_1248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
Motif
Other DBs
NCBI-ProteinID:
AAD08293
UniProt:
P56123
LinkDB
All DBs
Position
complement(1322761..1324695)
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AA seq
644 aa
AA seq
DB search
MQGFLRSLFFGVKKIPKPFAPLVEKGVLKEALELKKDRYFLKEGFDIGKVEKVKDKAFFI
SLAKNYPKDPLIKNLPPSFKTDALILCQIECSKKRPIAFFKAALLNADHTMIAYLAKKNN
QIVAIPFKEPFKKPVSLKHSQKSLLELPRHCVVKIDTKKREISEILGALEDPLIDENLSL
SLFDRVKDFSKDCLNLAQHYAQLKASDFKDRINYSHIPFITIDPKDAKDFDDAIFYDQEK
RVLFVAVADVSEFVPKHSSLDKEARVRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDNLKNARLSQGVIEVRANCTYEEINHFLSANQSSLDKDLQQSLLGFLEMALKL
KKERLKKGFNFNSFENKLYLNKEGRIEKIETEKESDAHTLIEEAMLLANQSSARLLDEHF
HNKGIYRTHKEPSLEQQKRLYDKLFDYEIVRPKNMGFFPFLEHALKIAKEKSIEREVSRL
IIKSQNLALYSPLQESHFGLGFASYTHFTSPIRRYSDLALHRLLKELLFYQAKGCSYLLE
ETPELCAELNALQKKAALIERDFIKRKFARLALELLEKEFLGVVLEVKDWVVVGLKEFIG
LKVLVKTNKVFKPLEKVRVTITHADLILGQVRGEITERIKEHVS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaagggtttttaagaagcctgttttttggggttaaaaagatccctaaaccattcgct
cctctagtagaaaagggcgttttaaaagaagcgcttgaattgaaaaaggatcgctatttt
ttaaaagaaggctttgatataggcaaagttgaaaaagtaaaagataaggcgtttttcatt
tctttagcgaaaaattaccctaaagaccctttaatcaaaaacttacccccatcttttaaa
acagacgctttgattttatgccaaatagaatgttctaaaaaacgccccatagcctttttt
aaagccgctcttttaaatgcagatcacacgatgatagcttacttggctaaaaaaaataac
cagattgtggctatcccttttaaagagccttttaaaaaacctgtttctttaaagcacagc
caaaaatccttactagaattgcccaggcattgcgtggtaaaaattgatactaaaaagcgt
gaaatcagcgagattttaggggctttagaagaccctttaatagatgaaaacctttctttg
agcctttttgacagggtgaaggatttttcaaaagattgcttgaatttagcgcaacattac
gcgcaacttaaagcgagcgattttaaagacaggatcaattattctcacatcccttttatc
accattgaccccaaagacgctaaagattttgacgatgcgattttttatgaccaagaaaaa
agggttttgtttgtggcggttgctgatgtgagcgaatttgtgccgaaacattccagtttg
gataaagaagctagggttaggggttttagcgtgtatttccctaatagcgtctatcccatg
ctgcctttgagtttgtctcaaggggcatgctcattaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctttagataatttgaaaaacgcccgattatctcaaggcgttatt
gaagttagggctaattgcacttatgaagaaatcaatcattttttaagcgctaatcaaagc
tctttagataaagatttgcaacaaagccttttagggtttttagaaatggctttaaagtta
aaaaaggagcgtttaaaaaaggggtttaatttcaattcctttgaaaacaagctgtatttg
aataaagaagggcgtatagaaaaaattgaaacagaaaaagaaagcgatgcgcacaccctc
atagaagaagccatgctcttagccaaccaatctagtgcgaggttattggatgagcatttt
cacaataaggggatataccgcacccataaagagcccagtttggagcagcaaaaacgcctt
tacgataagctttttgattatgagattgtgcgccctaaaaacatgggcttttttcctttt
ttagagcatgccttaaaaatagccaaagaaaagagtatagaaagagaagtttcgcgcttg
atcatcaagtctcaaaatttagccctttatagccccctgcaagaaagccattttggtttg
gggtttgctagctatacgcatttcacttcgcccattagacgatacagcgatctagcctta
cacaggcttttaaaagaattgttgttttatcaagctaaaggctgctcgtatttgttagaa
gaaacgcctgaattatgcgctgagttgaacgctttgcaaaaaaaggccgctttgattgaa
agggattttatcaagcgcaaattcgctcgcttagctttagaacttttagaaaaagaattt
ttgggcgtggttttagaggttaaagattgggtagtggtggggctaaaagaatttataggg
cttaaagttttagtcaaaacgaacaaggtttttaagccgttagaaaaggtgcgcgttaca
atcacgcatgcggatttgattttagggcaagttagaggcgaaatcacagaaaggattaaa
gagcatgtatcgtaa
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