Helicobacter pylori Aklavik117: HPAKL117_01240
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Entry
HPAKL117_01240 CDS
T02352
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpya
Helicobacter pylori Aklavik117
Pathway
hpya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPAKL117_01240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpya03019
]
HPAKL117_01240
03009 Ribosome biogenesis [BR:
hpya03009
]
HPAKL117_01240
Enzymes [BR:
hpya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPAKL117_01240
Messenger RNA biogenesis [BR:
hpya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPAKL117_01240
Ribosome biogenesis [BR:
hpya03009
]
Prokaryotic type
rRNA helicases
HPAKL117_01240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_30
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AFX90663
UniProt:
K7YC93
LinkDB
All DBs
Position
248593..250071
Genome browser
AA seq
492 aa
AA seq
DB search
MEFNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
EHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKTPNKKTHQHEQARSFKKGQHKDRHP
KTNHHSKKPKRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaatcaaccaccactccctacagaaattgatgatgacgcttaccataagccg
agttttaatgatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggtttc
acttccccaagccccattcaagaaaaggccattccggctgttttgcaaggtcgagatgtc
atcgcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctttgcccattatcaac
aaccttaaaaacaaccacaccatagaggccttagtgatcacgcccactagagaattagcc
atgcaaattagcgatgagattttcaaattgggcaaacacaccaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaaacaatgcgaatttattaagaaaaacccccaagtg
atgatcgctacaccaggaaggttgctagatcatttaaaaaacgaacgcatccataaattt
gtgcctaaagtggtcgtcttagatgaaagcgatgaaatgctggacatggggtttttagat
gatattgaagagatttttgactacctccctagcgaagcgcagattttgcttttttcagcc
acgatgccagagccgattaaaagactagcggataagattttagaaaaccctattaaaatc
catatcgctccttctaatatcactaacaccgacatcacccaacgcttttatgtgatcaat
gagcatgagagggccgaagcgatcatgcgccttttagacacccaagcgcccaaaaagagc
attgttttcacgcgcaccaaaaaagaagccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgccttgcatggggatatggatcaaagggatcggcgtgcttctatc
atggcgtttaaaaaaaatgacgctgatgtgttggtggctacagatgtggcgagccgtggg
ctagatattagcggtgtaagccatgtgtttaattaccacttgcccctaaataccgagagc
tatatccatcgcatcgggagaaccgggcgagcgggcaaaaaaggcatggcgatcacttta
gtaacccccttagaatacaaagagcttttacgcatgcaaaaagaaattgattcagagatt
gaactttttgagatccccaccattaacgaaaatcagatcatcaaaaccttgcatgacgct
aaagtgtctgaaggaatcatcagtctttatgaacagcttaccgaaatctttgagccgtct
caattggttttaaagcttttgagtttgcagtttgaaaccagcaaaattggcttaaaccag
caagaaattgatgcgattcaaaaccctaaagaaaaaacgccaaaaacccctaacaaaaaa
acgcatcagcatgagcaagcgcgttctttcaaaaagggtcagcacaaagacagacaccct
aaaacaaaccaccattctaaaaaacccaaacgccgttaa
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