Helicobacter pylori Aklavik117: HPAKL117_01300
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Entry
HPAKL117_01300 CDS
T02352
Symbol
xseA
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
hpya
Helicobacter pylori Aklavik117
Pathway
hpya03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HPAKL117_01300 (xseA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpya03400
]
HPAKL117_01300 (xseA)
Enzymes [BR:
hpya01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
HPAKL117_01300 (xseA)
DNA repair and recombination proteins [BR:
hpya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HPAKL117_01300 (xseA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
Viral_P18
CcmE
SSB
Motif
Other DBs
NCBI-ProteinID:
AFX90675
LinkDB
All DBs
Position
261079..262341
Genome browser
AA seq
420 aa
AA seq
DB search
MDVLSVSEINAQIKALLEATFLQVRVQGEVSNLTIHKVSSHAYFSLKDSQSVIRCVLFKG
NANRLKFALKEGQEVVVFGGISAYVPRGDYQINCFEIEPKDIGSLTLALEQLKEKLRLKG
YFDEAHKLPKPHFPKRVAVITSQNSAAWADMKKIASKRWPMCELVCINALMQGEGCVQSV
VESIAYADSFHGTKNAFDAIVVARGGGSMEDLYSFNDEKIADALHLAKTFSMSAIGHESD
FLLSDLVADLRASTPSNAMEILLPSSDEWLQRLDGFNVKLHRSFKILLHQKKAHLEHLEA
SLKRLSFENKHHLNALKLEKLKIALENKTLEFLRFKKTLLEKISTQTLTSPFLQTKTERL
NALENALKLAHAHLKLPQFGAFVSKNNQAIELEALKRGDKIALSNEKARASATILSVDRV
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
gtggatgtattgagcgtgagcgaaatcaatgcgcaaatcaaagcccttttagaagcgact
tttttgcaagttagggttcaaggggaagtgagtaatttgacgatccataaggtgagcagc
catgcgtatttttcgctcaaagacagccagtcagtcatcagatgcgtgttgtttaaaggg
aacgctaacaggctcaaattcgctttaaaagaagggcaggaagtggttgtttttgggggc
attagcgcgtatgttccaaggggggattatcaaatcaattgctttgaaatagagcctaaa
gatataggttcattaaccctagctttagagcaattgaaagaaaaattacgccttaaaggc
tattttgatgaagcccataaattgcccaaaccgcattttcctaaacgagtggcagtcatc
acttctcaaaattcagccgcttgggcggacatgaaaaagatcgcttccaaacgatggccg
atgtgtgaattggtttgcatcaatgcgttaatgcaaggggagggttgcgttcaaagcgtg
gtggagagcatcgcttatgcggatagctttcatggcacaaaaaacgcttttgatgcgatt
gtggtggctaggggtggggggagcatggaggatttgtattctttcaatgatgagaaaatc
gctgatgcattgcatttggctaaaactttcagcatgtcagctattgggcatgagagcgat
tttttattgagcgatttggtagcggatttaagggcttctacgccttcaaacgcgatggag
attttactccctagcagcgatgaatggttgcaaagacttgatgggtttaatgtgaaattg
caccgctcttttaaaattttgctccatcaaaaaaaggcgcatttagagcatttagaggct
tctttaaaacgattgagttttgaaaacaagcaccatttaaacgctttaaaactagagaaa
ttaaaaatcgctttagaaaataaaaccctagaatttttacgctttaaaaaaacgctttta
gaaaaaatctctactcaaacattaacaagcccttttttacaaactaaaacagagcgattg
aacgcactagaaaacgcccttaaactcgctcatgcacatttgaaattgccccaattcggg
gcgtttgtgagcaaaaataaccaagcgatagaattagaggcattaaaaaggggcgataaa
attgcattgagcaatgaaaaagccagagcgagcgctactattttaagcgtggatagggtg
tag
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