Helicobacter pylori Aklavik117: HPAKL117_02230
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Entry
HPAKL117_02230 CDS
T02352
Name
(GenBank) topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hpya
Helicobacter pylori Aklavik117
Brite
KEGG Orthology (KO) [BR:
hpya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpya03032
]
HPAKL117_02230
03400 DNA repair and recombination proteins [BR:
hpya03400
]
HPAKL117_02230
Enzymes [BR:
hpya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HPAKL117_02230
DNA replication proteins [BR:
hpya03032
]
Prokaryotic type
DNA Topoisomerases
HPAKL117_02230
DNA repair and recombination proteins [BR:
hpya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPAKL117_02230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AFX90861
LinkDB
All DBs
Position
complement(453864..455924)
Genome browser
AA seq
686 aa
AA seq
DB search
MKDSVIIIESPNKVAKIKEITGVKVYATIGHFMQLKSYDENNNFKPTFEYDPQKKKRIFE
MIEACKNKKVYIATDPDREGYAIGYHFYEKIKKIASSIYRAEFFEITPSGINKGLQNASL
FENTNKQMYQSALARRVADMLLGFTLSPYLGKALGQMKGSSAGRVQIPCLKLIVDRDREI
EKFKALPENEKVSYQIQAKINDNANKEVIIKHCDENGEEIKFNDKEEVLKLFESLKDNKA
CLLKDLKNSILETKPKKPFITSTLLEKASSELGLSIAEVQSLAQSLFEAGLITYIRTDAE
SLSVEFLNEAESFYTPIYKEVYLKREYKAGKQSQAEAHEAIRITHPHKYEDLESVVYNAG
IANQDALKLYQLIFERTIESQGKNAIYDKQDLLFKIKNEYFKCSVKSLKSAGFLAMFSKK
ELESDESNDDKDDKEKEQNAQFNLKIDDMLSLNDLILATIKRNAPSPYKEAGFVKLLENK
GIGRPSTYASYLPTLLKREYISISQDKKHTITPTHKGKRVIEVFENAYQFIIDLTYTKQM
EEVLDEIVENKSSYLDFLQNLATKCPKIEKLERNDDEIKPSSEGQITYIENILRDLQLDL
SEEFKNYKEDNRVAKAFLDKYIKEHEFFKKNNKKASSSNNNETRPATPKQINFAEILAKK
HNVKLPKDYKSNMKVCGDFIDEYSKK
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatagtgtcatcattattgaaagccctaataaagtggctaagattaaagaaatc
acaggagttaaagtttacgctaccatagggcattttatgcagctaaaaagctatgatgaa
aataataactttaagccgacttttgaatatgacccccaaaagaaaaagcgtatttttgag
atgatagaggcgtgtaaaaacaaaaaggtttatatcgctactgaccctgatagagagggc
tatgctataggctatcatttttatgaaaagattaaaaagatagcaagttctatttatagg
gcggagttttttgaaatcacgccaagtgggattaacaagggcttacaaaacgcttcttta
tttgaaaacactaataagcaaatgtatcaaagtgctttagcaaggcgtgtggctgatatg
ctcttaggttttacgctctccccttatttaggcaaagctttagggcaaatgaaaggctct
agtgctggaagagtgcaaatcccttgtttaaagcttattgtggatagagacagagaaatt
gaaaaatttaaggctttacctgaaaatgagaaagtaagctatcaaatccaagctaagatt
aacgacaatgctaataaagaagtcattatcaagcattgtgatgaaaatggcgaagaaatc
aagtttaatgataaagaagaggttttaaaactctttgaaagtttgaaagacaataaagct
tgtcttttaaaagatttaaaaaattctatcctagaaactaaacctaaaaaaccttttatc
acttctacgcttttagagaaagcgagctctgagttaggtttaagtatcgctgaagtgcaa
tctctagctcaaagtctttttgaggctgggctaatcacttacattagaacggacgctgaa
agtttgagtgtggaatttttaaatgaggcagagagcttttacacacccatttataaagaa
gtgtatctaaaaagagaatataaagctggtaagcaaagccaagcagaagctcatgaagct
attcgtatcactcacccccacaaatacgaagatttagaaagtgtggtctataatgctggc
attgctaatcaagacgctttaaaactctatcaacttatttttgaaagaactattgaaagt
caaggcaagaatgctatttatgacaaacaagacttgctctttaaaatcaaaaatgagtat
tttaagtgtagcgttaagagtttaaaaagcgctgggtttttagcaatgttttctaaaaaa
gaattagagagcgatgaaagtaatgatgacaaagatgataaagaaaaagagcaaaacgct
caatttaatctaaaaattgatgatatgttaagtctaaatgacttaattttagctaccatt
aaaagaaatgccccaagcccttataaagaggcaggttttgtaaagcttttagaaaataaa
ggcataggaagacctagcacttatgcgagttacttgcctactcttttaaaaagagaatat
attagcattagccaagataaaaagcacaccattactcctacgcataagggtaaaagagtg
atagaagtgtttgaaaatgcttatcaattcattattgatttgacctacaccaaacaaatg
gaagaagtgctagatgagattgtagaaaataaaagctcatacttagattttttacaaaat
ttagccactaaatgccctaagattgaaaaactagaaagaaatgatgatgagataaagcct
agtagtgaggggcaaatcacttatatagaaaacattttaagagatttgcaattagacttg
agcgaagagtttaaaaactacaaagaagataatagagtggctaaggcgtttttagataaa
tacattaaagagcatgagttttttaagaaaaataacaaaaaggctagtagctctaataat
aatgaaactagacctgctacacccaaacaaattaactttgctgaaatattagctaaaaag
cataatgtcaagctccctaaagattataaaagcaatatgaaagtgtgtggggattttatc
gatgagtatagtaagaagtag
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