KEGG   Helicobacter pylori Aklavik117: HPAKL117_05420
Entry
HPAKL117_05420    CDS       T02352                                 
Name
(GenBank) signal recognition particle protein
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
hpya  Helicobacter pylori Aklavik117
Pathway
hpya02024  Quorum sensing
hpya03060  Protein export
hpya03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:hpya00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    HPAKL117_05420
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    HPAKL117_05420
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    HPAKL117_05420
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:hpya02044]
    HPAKL117_05420
Enzymes [BR:hpya01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     HPAKL117_05420
Secretion system [BR:hpya02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   HPAKL117_05420
  Eukaryotic Sec-SRP protein
   HPAKL117_05420
SSDB
Motif
Pfam: SRP54 SRP_SPB CbiA SRP54_N AAA_31 AAA_22 Zeta_toxin AAA_30 AAA_24 nSTAND3 AAA_17 SLFN-g3_helicase cobW NPHP3_N AAA_19 6PF2K ArsA_ATPase AAA_14 AAA_16 APS_kinase Fer4_NifH T2SSE AAA_11 AAA AAA_33 KAP_NTPase NTPase_1 Thymidylate_kin ParA ABC_tran KTI12 NACHT AAA_5 ResIII TsaE AAA_18 PhageMin_Tail ParBc YqeC ATP_bind_1
Other DBs
NCBI-ProteinID: AFX91474
LinkDB
Position
complement(1138424..1139770)
AA seq 448 aa
MFQALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLN
GIGKQQFLNALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKT
KNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVFYEENKSVKEIANNALKRAKEAQFDVLL
VDSAGRLAIDKELMQELKEVKEILNPHEVLYVADALSGQDGVKSASAFNEEIGVSGVVLS
KFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGDIISLAEKTA
SVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMANALKDTDL
ESSLEVKKIKAMVNSMTKKEQENPEILNGSRRKRIALGSGLEVSEINRIIKRFDQASKMA
KRLTNKKGISDLMNLMSQAKNQTPPKMC
NT seq 1347 nt   +upstreamnt  +downstreamnt
atgtttcaagcattaagcgatgggtttaaaaacgcgctcaataaaatccgctttcaagat
gatgaaaaagcgctagatcgggcgttagatgaattgaaaaaaacgcttctaaaaaatgat
gtgcatcataaagtggctagagaattgctcaaaaaagtggaaagtcaaaccaaacttaat
ggcattggtaagcagcaatttttaaacgctttggaaaagagtttgttagaaattttaagc
gctaaagggagcagtggttttactttcgctcaaacgccccccaccgtggttttaatggcc
ggtttgcaagggagcggtaagacaaccaccaccgctaaactcgctcattatttaaaaacc
aaaaataaaaaagtgcttttatgtgcatgcgatttgcaacgcctagcggcagtggagcaa
ttaaaggttttgggcgaacaggtgggcgtggaagttttttatgaagaaaataaaagcgtg
aaagaaatcgctaacaacgctttaaaaagggctaaagaagcgcaatttgatgttttgctc
gtggatagcgcggggcgtttagccattgataaagagcttatgcaagaattaaaagaagtt
aaagaaatcttaaacccccatgaagtgctgtatgtcgcagacgccttgagcgggcaagat
ggggtcaaaagcgcgagcgcatttaatgaagaaataggcgtgagtggtgtggtgttaagc
aaatttgatagcgattctaaagggggtatcgccttaggcatcacttaccaattaggctta
cccttgcgttttattgggagcggggaaaaaatccctgatttagatgtgtttgtgcctgaa
agaattgtggggcgtttgatgggggctggagatattatctcgctcgctgaaaaaaccgcc
agcgttttaaaccctaatgaagccaaagatttaagcaaaaaactcaaaaaagggcaattc
actttcaatgactttttaaaccagattgaaaaagtgaaaaaattaggctctatgagttct
ctaatctctatgattccaggtttagggaatatggcaaacgcgctaaaagacacggattta
gaaagctctttagaagtgaaaaaaatcaaagctatggttaattccatgaccaaaaaagag
caagaaaaccccgagattttaaacggcagccgaagaaaaaggatcgctttagggagcggc
ttagaagtatctgaaatcaatcgcatcatcaaacgctttgatcaagcgagcaaaatggcg
aaacgcttaacgaataaaaagggcattagcgatttgatgaatctaatgagtcaggctaaa
aatcaaacgccccctaaaatgtgctga

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