Helicobacter pylori Aklavik117: HPAKL117_06700
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Entry
HPAKL117_06700 CDS
T02352
Name
(GenBank) topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hpya
Helicobacter pylori Aklavik117
Brite
KEGG Orthology (KO) [BR:
hpya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpya03032
]
HPAKL117_06700
03400 DNA repair and recombination proteins [BR:
hpya03400
]
HPAKL117_06700
Enzymes [BR:
hpya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HPAKL117_06700
DNA replication proteins [BR:
hpya03032
]
Prokaryotic type
DNA Topoisomerases
HPAKL117_06700
DNA repair and recombination proteins [BR:
hpya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPAKL117_06700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Terpene_syn_C_2
INTS5_N
Motif
Other DBs
NCBI-ProteinID:
AFX91723
LinkDB
All DBs
Position
complement(1380097..1382031)
Genome browser
AA seq
644 aa
AA seq
DB search
MYKNCVFIIESPNKIAKIKELTGSSFVFATGGHFVELVNIEVSKEFNPIFEIKKSTDKKK
DKSTHINYMINQCKDKVVYIATDPDREGYGIGYKFYEKIKNIAKIIYRTEFHEITKSGVE
KGLNNAVLFSQSNLNLYYSWLGRIVSDQFVGFTLTSYLRKNIKNFEVSAGRVQTPALSIL
VELDRKIQAFEQKNIDEKLSYSIEAIIDVLGSQVSITLVEENKRKVFETKELAQNFLNDL
KNNLNPLAFLDAVEQKDKEKSPPKPFTTSNLLKDGVRILEMGVKQIQEHAQKLFEAGLIT
YIRTDSEALSKEYLQEHQAFFENIYPSVYEYREYRAGKNSQAEAHEAIRITHPHCYEDLK
KVCEKHNITDIDDLKVYTLIFFNTICSQSKNAIYENTTLNFKVKTHSFKCSFSKLKSKGF
KAIKDLEEEKKDEEEIESDLDFSSLQLKTQMPILDFNIKELKAKAPSPYTESTFIAMMET
YGIGRPSTYTSVFEILKNKNYITLEGKNRKITPTALGKSIVDFFLNDNQTQWIAISKVDD
SFTKKLEEMLDMIIKDGKSAYLDLMQNIQKKLGTEISNLYRNNNNNNVSATKKEMIPPTE
KQLNFVETIEKTLQIKASDMTKKDKFACMKFIEEHSKKMPKKDN
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtataaaaactgcgtatttatcatagaaagtcccaataagatcgctaaaatcaaagaa
ttaacaggaagttcatttgtttttgcgactggtgggcattttgttgagctagtcaatatt
gaagtgagtaaagaatttaatcctatttttgaaatcaaaaaaagcacggataagaaaaag
gataaatccactcatatcaactatatgataaatcaatgtaaagataaagtggtctatatt
gctactgaccctgatagagagggttatggtataggttataaattttatgaaaaaatcaaa
aatatagctaaaataatttatcgcactgagtttcatgaaatcacaaaaagcggtgtagaa
aaaggcttgaacaatgctgtgctattttctcaaagcaatctcaatctatattatagttgg
ctaggtaggatcgtaagcgatcaatttgtaggctttactttaacatcttatttgcgcaaa
aacattaaaaattttgaagtgagtgctggtagggttcaaacgcctgctctttccatttta
gtagaattagacagaaaaatccaagcctttgaacaaaagaatattgatgagaaattaagt
tatagcatagaagctattattgatgtgttaggttctcaagtctctattactttagtagaa
gagaataaaaggaaagtgtttgagaccaaagaattagcccaaaactttttaaatgactta
aaaaacaatcttaaccccttagcttttttagacgcagtagagcaaaaagataaagaaaaa
tctccacctaaaccttttaccacttctaatcttttaaaagatggggttagaattttagaa
atgggcgttaagcaaatccaagaacacgcccaaaaactttttgaagctggattgattact
tatattcgcaccgatagtgaagcgttaagtaaagaatacttgcaagagcatcaagcgttt
tttgaaaatatttatcctagcgtgtatgaatacagagaatatagggctggtaaaaattca
caagctgaagcgcatgaggctataagaattacgcaccctcactgctatgaagatcttaaa
aaagtgtgcgagaaacacaatattacagatattgatgatttaaaagtctatacgcttatc
ttttttaacaccatttgctctcaaagtaaaaacgctatttacgaaaacacaactttaaat
tttaaagtaaaaacgcacagctttaaatgcagttttagcaaactcaaatctaaaggcttc
aaagcgattaaagacttagaagaagaaaagaaagatgaagaagagattgaaagcgatctt
gatttttctagcttgcaattaaaaactcaaatgcctattttagattttaatatcaaagaa
ctaaaagctaaagctcctagcccttatactgaaagcacttttatcgcaatgatggaaacc
tatggcataggaagacctagcacttatacaagtgtatttgagatcttaaaaaacaaaaat
tacattacattagagggcaaaaataggaagatcacgcccacagctcttggtaaaagcatt
gttgatttctttttgaatgataaccaaacacaatggattgctatttctaaagtggatgat
agttttacaaaaaaattagaagaaatgttagatatgattataaaagatggtaaaagtgct
tatcttgatttaatgcaaaatatccaaaagaaattaggcacagaaatttctaatttatat
agaaataataacaataacaatgtttctgctacaaaaaaagaaatgatacctccaactgaa
aaacaacttaattttgtagaaactatagaaaaaactcttcaaataaaagcttctgatatg
acgaaaaaagacaagtttgcgtgcatgaagtttatagaagaacatagtaaaaaaatgccc
aaaaaggataattga
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