Helicobacter pylori oki102: HPOKI102_02020
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Entry
HPOKI102_02020 CDS
T03182
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpyb
Helicobacter pylori oki102
Pathway
hpyb03410
Base excision repair
hpyb03430
Mismatch repair
hpyb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPOKI102_02020
03430 Mismatch repair
HPOKI102_02020
03440 Homologous recombination
HPOKI102_02020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyb03400
]
HPOKI102_02020
DNA repair and recombination proteins [BR:
hpyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HPOKI102_02020
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HPOKI102_02020
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPOKI102_02020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
GLUCM-like_C
Fe-S_biosyn
Motif
Other DBs
NCBI-ProteinID:
AHN34395
LinkDB
All DBs
Position
complement(391082..392632)
Genome browser
AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERVASIAYNEKGFPNPFLFKDLKKAALKIIEAMHANTEILVVGDYDADGV
ISSAIMAKFFESLNYKHVRIAIPNRFMDSYGISKKFLEKHHAPLIITVDNGINAFEAARF
CKEKNYTLIITDHHCLNNDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFNIAPLINSAGRMQDAKIALDFLSASNFQDGYSLYERLKACNLKRKMIQQQVF
EEAFKHAMVGEKIIIAFKEDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSPN
IDLIDALNGVSSLLLGYGGHRQACGLSVEKNNIVSLFETLENFDFKVLPFCEKEPPLTLK
LKDIDRELLEIIEMGEPYGQENPEPLFQAQNLEIVEEKIIKESHQVLRFKDKECVKEAIY
FNADRFLKAGEKVSVLFSVELDECSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcctctatcgcctataatgaa
aaagggtttcctaacccctttttatttaaagacttgaaaaaagccgcgctcaaaatcata
gaagccatgcacgcaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
attagctctgctatcatggcaaaattttttgaaagcctgaactataagcatgtccgcatt
gcaatccctaatcgtttcatggatagctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataacgggattaacgcctttgaagccgcgcgattt
tgtaaagaaaaaaactacacccttatcattacggatcaccattgcttaaataatgatgaa
gtcccagacgcttatgcggtaatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgtggggcgttagtggcgttttatttgtgctatggaatccaccaacttttaggc
aaagaaaaaagccattctagtgagttgctatgcttagcgggcgtggcgactatcgctgat
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggggcgatggggtttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagtgatatttcttttaatatcgcccctttaatcaattccgcagggcgcatg
caagatgcgaaaatagctttagattttttaagcgcgagtaattttcaagatggttattct
ttgtatgaacgcttgaaagcatgcaatttgaagcgtaaaatgatccaacagcaggttttt
gaagaagcttttaagcatgcgatggttggagaaaaaatcatcatcgcttttaaggaggat
tggcatgagggcgtgctggggattgtggcttcaaaattagtggaagccactcaaaagcca
agcttggtttttacctttaaagaaggggtgtataaagggagcgctcgtagctctccaaat
attgacttgattgacgctttgaatggggtttcttctttattgctcggctatggagggcat
aggcaagcttgcggattgagcgttgaaaaaaacaatatcgtctcgctctttgaaacttta
gaaaattttgattttaaagtcttacctttttgtgaaaaagaaccccctttaacgctcaaa
ttaaaagacattgacagagagcttttagagattatagagatgggcgaaccttatgggcaa
gaaaaccctgagcctttattccaggcacaaaatttagaaatcgtagaagaaaaaatcatt
aaagaaagccaccaggttttgcgttttaaggataaagaatgcgtcaaagaggcgatttat
tttaacgctgatcggtttttgaaagcgggcgaaaaggtgagcgtgctttttagcgtggaa
ttagatgagtgttctaatgagcctaaaatgtttgttaaaagtttgttgtag
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