Helicobacter pylori oki102: HPOKI102_04265
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Entry
HPOKI102_04265 CDS
T03182
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hpyb
Helicobacter pylori oki102
Pathway
hpyb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPOKI102_04265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpyb03021
]
HPOKI102_04265
03019 Messenger RNA biogenesis [BR:
hpyb03019
]
HPOKI102_04265
Transcription machinery [BR:
hpyb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HPOKI102_04265
Messenger RNA biogenesis [BR:
hpyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPOKI102_04265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
S1CSD-TOTE-2
AAA_28
AAA_22
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AHN34810
LinkDB
All DBs
Position
861811..863127
Genome browser
AA seq
438 aa
AA seq
DB search
MNENAPTHKSSHKVKTHTPVSGYHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEI
LKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVT
GQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRM
LDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQR
SVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSVTRLARAYNAVTPSS
GKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNS
EIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYS
KMQQTKDNEEFLNLMNEK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaacgcgcctacgcacaaaagttcgcacaaagtcaaaacacacacgccagtg
agcggttatcacattgaagatttacgcacctaccctactgaaaagcttttagaaatcgct
aacaagctcaaagtggaaaacccccaagaattcaaacgacaagacttgatgtttgaaatt
ttaaaaacccaagttacgcaaggcggatacattctttttaccgggattttagagatcatg
cctgatggctatggctttttaagagggtttgatgggagtttttcagatgggcataacgac
acttatgtcagcccttctcaaatcaggcgttttgctttaaggaatggcgatattgttacc
ggtcaagtgcgatcccctaaagaccaggaaaaatactacgcccttttaaaaatagaagcc
atcaattatttgccttcagatgagattaaaaaccgccctttgtttgataatctaaccccc
ctattcccggatgaacaaatcaaattagaatacgaacccactaaagttaccggcagaatg
ctagatttattcagccctgtggggaaaggtcaaagggctttgatcgtcgcaccaccaagg
actgggaaaacggagctcatgaaagaactcgcccaaggcatcacctctaaccaccctgaa
gtggagctgattatccttttagtggatgagcgccctgaagaagttacggatatgcaacga
agcgttaaaggtcaagtttttagctccacttttgatttgcccgcaaacaaccacataaga
atcgctgagttggtgctagaaagggcgaaaaggcgagtggaaatgggaaaagatgtggtg
gttttattggattctgtcacccgtttagccagagcgtataacgctgtaacgccttcaagc
ggtaaggttttaagtgggggcgtggatgcgaacgccttgcacagacccaagcgctttttt
ggagccgcaaggaatattgaagaaggcgggagtttgacgattatcgctacggcgttgatt
gaaacgggatctagaatggatgaagtgatttttgaagaatttaaaggcactgggaatagc
gaaatcgttttagcgaggaatattgcggacaggcgcatttacccagcctttgatatttta
aaatccggcacacgaaaagataatatcctgcttggcaaagaccgcttgactaaagtgtgg
gttttaaggaatgtgatgcaacaaatggacgatatagaagccttaagctttgtgtattct
aaaatgcaacaaactaaggacaatgaagaatttttaaacttaatgaatgaaaaataa
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