Helicobacter pylori oki102: HPOKI102_05860
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Entry
HPOKI102_05860 CDS
T03182
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hpyb
Helicobacter pylori oki102
Pathway
hpyb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOKI102_05860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyb03400
]
HPOKI102_05860
DNA repair and recombination proteins [BR:
hpyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPOKI102_05860
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HPOKI102_05860
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
DUF87
HAM1_N
Kinesin
AAA_7
Microtub_bd
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHN35069
LinkDB
All DBs
Position
complement(1190330..1192321)
Genome browser
AA seq
663 aa
AA seq
DB search
MRVLKMPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQT
NKPTLIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSIN
DDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKL
VEMGYSRNEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIK
RLDSIMLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEM
ISTTGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAG
DMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQII
RPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKA
RYMHSEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSET
SLIQTMGRAARNANGKVLLYAKKTTQSMQKAFEVTSYRRAKQEEFNKLHNITPKTVTRAL
EEELKLRDDEIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL
RTL
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgcgagttttaaagatgcctttatttgatttaaaaagcccttacccaccagcaggcgat
cagccccaagccatagaagctttaacaaaaagcttgaaaaataacaaccattatcaaact
ctagtgggggttacagggagcggtaagacttatacgatggccaatatcatcgctcaaacc
aataaacccactttgatcatgagccataataagaccttatgcgcacagctttatagcgag
tttaaggcgtttttcccgcataatagggtggagtattttatctcccactttgattactac
cagcctgaaagctatatccctaggagggatttatttattgaaaaagacagctctattaac
gatgatttagagcgtttgagattgagcgcgaccacctcacttttaggttatgatgatgtg
atcgtgatagcgagcgtttcggctaattatggtttgggtaaccctgaagaatatttaaaa
gtcatggaaaaaatcaaagtgggtgagaagcgtgcttacaagagctttttattaaagcta
gtagaaatgggttatagccgtaatgaagtggtgtttgatagggggagctttagagcgatg
ggggaatgtgtggatattttccccgcttataatgacgctgaatttattaggattgaattt
tttggcgatgagatagaaaggattgcagtctttgacgctttagaaagaaatgaaatcaaa
cgcttggattctattatgctttatgcggccagtcagtttgccgtagggagcgagaggctg
aatttagccattaaaagcattgaagatgaactcgctttaagattgaaattttttaaagag
caggataaaatgcttgaatacaaccgcctcaaacaacgcaccgagcatgatttagaaatg
attagcacgaccggtgtgtgtaagggcattgaaaattacgcgcgccatttcaccggtaaa
gcccctaacgaaacgcctttttgcttgtttgattatttagggatatttgagcgggagttt
ttagtcattgtagatgaaagccatgtgagtttgccgcagtttggagggatgtatgcaggg
gatatgagcaggaaaagcgttttagtggaatatggttttagattgcctagcgctttagac
aaccgccctttaaaatttgatgaatttatccataaaaattgccagttcctttttgtgtcc
gctacgcccaataagctcgaattagagctttccaaaaagaatgtcgctgagcaaatcatt
cgccctacagggcttttagaccctaaatttgaagtgcgagacagcgataagcaggtccag
gatttatttgatgaaatcaagttagtggtggccagagatgaaagggtgctcatcaccacg
ctcactaaaaaaatggcagaagaattgtgtaaatattatgctgaatggggcttgaaagcg
cgttacatgcatagtgaaattgatgcgattgaaagaaatcacatcatccgctctttaagg
cttaaagaatttgacattttaatagggatcaatcttttaagagaagggctggatttgcct
gaagtctctttagtagcgatcatggatgcggataaagaagggtttttaaggagtgaaaca
agcctcattcaaaccatgggacgagccgctagaaacgctaatggcaaggttttattatac
gctaaaaaaaccactcaaagcatgcaaaaagcctttgaagttactagctacaggcgcgct
aagcaagaagagttcaataagcttcataatatcacccccaaaaccgttactcgcgcttta
gaagaggagttgaaattaagagacgatgagattaaaatcgctaaagccttaaaaaaggac
aaaatgcctaaaagcgaaagggaaaaaatcattaaagaactggataaaaaaatgcgagaa
tgcgcgaaaaatttggattttgaagaagcgatgcgtttgagagacgaaatcgctcaatta
agaacgctttaa
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