Helicobacter pylori oki102: HPOKI102_06430
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Entry
HPOKI102_06430 CDS
T03182
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hpyb
Helicobacter pylori oki102
Pathway
hpyb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPOKI102_06430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpyb03019
]
HPOKI102_06430
03016 Transfer RNA biogenesis [BR:
hpyb03016
]
HPOKI102_06430
Enzymes [BR:
hpyb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HPOKI102_06430
Messenger RNA biogenesis [BR:
hpyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPOKI102_06430
Transfer RNA biogenesis [BR:
hpyb03016
]
Prokaryotic type
tRNA degradation factors
HPOKI102_06430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AHN35165
LinkDB
All DBs
Position
complement(1303305..1305371)
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AA seq
688 aa
AA seq
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MDFITINSSNKTEEFALKQVAKQATSSLLYRLGKTIILASVCTEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPNTSLLNQSSLDLFVSGTKE
SLNMIEMRSLGQQLNALEESLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGII
FNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVK
KTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLEILYQALLQAKEARKHILKIMHEAKE
KIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQHMDR
CQVVLKEGDSIKCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcaattctagtaacaaaaccgaagagttcgctctcaaacaagtg
gccaaacaagccaccagctctcttttatatcgcttaggaaaaaccatcattttagcgagc
gtgtgcacagaaagagagcctgtgagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggaaagatcccgggcggttttgttaaaagagaaggcagggca
caagattttgaaatcttaacctctaggcttatagacaggactttacgccctttattccct
aaagactaccgctaccctacgcagatcactttaatggttttaagccatgatattgaaaat
gacttgcaggtttctgctttaaacgccgcttcagccgctctctttttatcccatatcgct
cccattaaaagcgtgagcgcttgcaggatcgctaggattgataacgaatttatcattaac
cctaacacaagccttttgaatcaatccagtttggatttgttcgtgtccggcacaaaagag
agtttgaacatgatagaaatgcgctctttggggcaacaattaaacgctttagaagagtct
ttaatgctaaaagctttagaattggctcaaaaaagtttgaaagaaacttgcacgctttat
gaagagattttcacgccccaccaaaacgagctgcttttcaaagagagccaaggaataatt
tttaatgaaaggctgttagatctattaaaaaatcagtattttgatgaaatcatcaaaggc
attgaaagttctgctttgagcgagcgagaaaatgttttcaatgaaattgccagaaaaatc
agtgaagcccactcagaattcagtttagaagaaattgaattgtctttagaaaaagtgaaa
aaaactgagataagacgcatgatcattaaggataaaatccgcccggataagcgcgcgtta
gaagaagtgcggcccattttgatagagagcgatttgctccctatggcgcatagctccatt
ttattcactagggggcaaacgcaaagcttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaagcccctattaaagagcgcttcatgtttcat
tataatttccctcctttttgcgtgggcgaagcgagctctatcggcgcgacttcaaggcgc
gaattagggcatgggaatttggctaaaagggccttagaaacgagtattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcaggctctttagccctttatgcaagcggtgtggaaatttatgatctagtcgct
ggggtggctatgggcatggtgagcgaagggcaagatcacgccattttaagcgatattagc
ggtttagaagacgcagaaggcgatatggattttaagattgccgggaatttagaaggcatt
acggccatgcaaatggataccaaaatgagcggtatcaagctagaaattttataccaagcc
ttactccaagctaaagaagcgcggaaacatattttaaaaatcatgcatgaagcgaaagaa
aagattgtgatcaatttttcccatttgcccacgactgaaatttttaatgtcgcgcccgat
aaaattgtagaaattatcggtcaaggggggcgtgtgattaaagagatagtggaaaagttt
gaagttaaaattgatttgaataaaccgagcggtgaagtgaaaatcatggggaataaagaa
cgggttttaaagactaaggaatttattttaaactatttgcattctttagatcaagaattg
gagcaatacgctattgatgaggtgctagaagctcaagtgaaacgaatcgtagattttggg
gcgtttttaagcttgcctaaggggggcgaaggcttgttgagaaaacaacacatggacagg
tgtcaagtggttttaaaagaaggcgatagcatcaaatgtagggtgattagtttcaataag
ggtaaaatcgctttggatttggcttaa
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