Helicobacter pylori oki102: HPOKI102_07950
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Entry
HPOKI102_07950 CDS
T03182
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpyb
Helicobacter pylori oki102
Pathway
hpyb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOKI102_07950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyb03400
]
HPOKI102_07950
Enzymes [BR:
hpyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPOKI102_07950
DNA repair and recombination proteins [BR:
hpyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPOKI102_07950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AHN35447
LinkDB
All DBs
Position
1595082..1598081
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESKLAKEVINYFKPNTKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQETIIIAPISALLHPLPKKELLESFKITLLGKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDTECESIKEFDPTTQMSL
KEDLLEIEIPPTLFSLDEPSYKNLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPKALEEIQELASLNELDGERFKFLKVLENAQGYEDLEIPAHALEGFIALHSNRKIT
LLAPNKTILDNVLGALERSNIECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVAQS
DSVPAKDRLGKGSFLKLKAKVRTKLLEIASKIIELAAERNLILGKKMDVHLAELEVFKSH
AGFEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVGLGLIDVLVGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLEDLIPKLKIAI
LHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLGVSAFLNPELIASDSLRLD
LYRRLSLCENADEVGQIHEEIEDRFGKTDDLSAQFLQIITLKILANQLGILKLSNFNQNI
TITYSDEKKESLKAPSKDDNDILETLLKHLRAQISLKRR
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagtctttatagagccttaaacaaaggctttgattaccaaatactcgct
tgtaaggattttaaagaatccaagctcgctaaagaagtcataaactattttaagccaaat
accaaagccattcttttcccggaatttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttaagggagttttatcaagccttagaaaac
aagcaagaaactatcatcattgcccctattagcgctttattacaccctttacccaaaaaa
gaacttttagagagctttaaaatcactcttttaggaaaatataaccttaaggatttaaaa
gacaagctcttttattatggctatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgcctaattctaaagcgtatcgcttgagc
ttttttgacacggagtgtgagagcattaaggaatttgaccccaccactcaaatgagcctt
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttggacgaaccatct
tataagaatctaaaaacaaaagtggaacaaagccccttaaatagcttttctaaagattta
accagttttggtttgtggtttttaggagaaaaagcaaacgatttgttgcatgcctataaa
agcgttataagccctaaagctttagaagaaattcaagaattggcgagcttaaacgaattg
gatggtgagcgtttcaaatttttaaaggttttagaaaatgcgcaaggctatgaagattta
gaaatccctgcgcatgccctagaaggctttatcgctttgcattcaaatcgtaaaatcacg
ctcctagctcctaataaaacgattttagacaatgtattaggcgcacttgaaagaagcaac
attgaatgcgtcatcgccccctttgtgttaaactttaaaacccctgatgggatttttatt
tcgctcaattcttttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgaa
ttgaatccgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccagcacagcgttttagggagcaagagggattttttagaaatcgcttatttgggcgaa
gacaaactgctattgccggtagaaaatttgcatctcatcgctcgctatgtggcgcaaagc
gatagcgtgccagctaaagaccggctagggaaagggagctttcttaaattaaaagctaaa
gtcaggactaagcttttagagattgctagcaagatcattgaactagcggctgaacgcaat
ttgatcttgggtaaaaagatggatgtgcatttagcggagttggaagtctttaaatcgcat
gcggggtttgaatacacaagcgatcaagaaaaggctatcgccgaaatttcaagggattta
agctctcacagggtgatggatagacttttgagtggggatgtgggttttgggaaaacagaa
gtggcgatgcatgcgattttttgtgcgtttttgaacggctttcaaagcgcactagttgtg
cctactactttattagcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggatcggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtgggattagggctgattgatgttcttgtaggcacgcatgcgattttaggcgcgaaattc
aaaaacttgggattagtggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagtaaaagcgtgcattttttaagcatgtccgctacgcctatcccg
cgcactctaaatatggcgctctctcaaattaaaggcatcagctctttaaaaaccccaccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
atcattcatagagaattacgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagatttaatccctaaactcaaaatcgctatt
ttgcattctcaaattaacgctaacgagagcgaagaaatcatgctagagtttgctaagggg
aactatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgattattatagataacgcgcaaaattttgggctggctgatttgcaccaattaaga
gggcgtgtggggagaggtaaaaaagaaggcttttgctatttcctcatagaagatcaaaaa
agtttgaatgaacaggctttaaaacgcttgctcgctttagaaaaaaattcgtatttgggc
agtggggagagtatcgcctatcatgatttagaaattagggggggcgggaatttgctcggg
caagatcagagcgggcatattaaaaacattggttatgcgctctatacacgcatgcttgaa
gacgcgatttatgaattgagtggggggaaaaaaaggcttgaaaaaagcgtagaaatccaa
cttggcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggctggat
ttgtatcgccgtttgagtttgtgtgaaaatgcagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaacagacgatttgagcgctcaatttttgcaaatcattacg
cttaaaattctagccaaccagcttggcatccttaaactttctaatttcaatcaaaacatc
accatcacttatagcgatgagaagaaagaaagcctaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgcgctcaaatttctttaaaacggcgttaa
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