Helicobacter pylori oki112: HPOKI112_03480
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Entry
HPOKI112_03480 CDS
T03723
Name
(GenBank) RNA polymerase sigma54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
hpyc
Helicobacter pylori oki112
Pathway
hpyc02020
Two-component system
hpyc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpyc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HPOKI112_03480
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPOKI112_03480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpyc03021
]
HPOKI112_03480
Transcription machinery [BR:
hpyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPOKI112_03480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF3288
Motif
Other DBs
NCBI-ProteinID:
AHN36139
UniProt:
X2HSK2
LinkDB
All DBs
Position
682766..684010
Genome browser
AA seq
414 aa
AA seq
DB search
MAILRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIENKRIKNFSDRF
SAKNSNDHLENFAIASRSLFETLEAQIIPPLFPTEISQKIAMDIINGLDSEGYFEENIEE
RARILGVESEVYEKVHQRFSYLNPAGIGARDVKESFLFQLESRELDNNELYEEARKIILN
LEKHHEFSKDFYYEKALKILKSFKNPPAIEFLEKEIEVIPELFIVEVDDEIIVRLNDESY
PTISLEENRFKDSGYLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQYDFFKGKKLRPL
KLLDLANEFNHSVSTISRAISNKYLACERGVFPIKHFFSTALDNSETSNAVIKDYLLELI
KNEDKKEPLSDAKILELIEEKFHLKMVRRTITKYRQLLNIASSSERKKLYLMRA
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcttacgcgcaaaccttagccctaaaaataaattaaacgctaccttaaaaggg
tggctccccattttacaaagcgagcttgaagatttagaagaagtgttgaaacaaaacgcc
ctggataaccccttaatcaaaattgaaaacaaacgcatcaaaaattttagcgatcgcttt
agcgctaaaaatagcaacgatcatttagaaaatttcgcaatcgcttctagaagccttttt
gaaaccttagaagctcaaatcattccccccctctttcctactgaaatctctcaaaaaatc
gctatggatattatcaacgggctagatagtgaagggtattttgaagaaaacattgaagaa
agggctagaattttaggggtagagagcgaagtttatgaaaaagtgcaccagcgtttcagt
taccttaatcctgctggcattggtgctagagatgtgaaagagagctttttattccagcta
gagagtagggaattagacaataatgagctttatgaagaagcgcgaaaaatcattttaaat
ttagaaaaacaccacgaattttctaaagatttttattatgaaaaggctttaaagatttta
aaatcctttaaaaaccccccagccattgagtttttagaaaaggaaatagaagtcattcct
gagctttttattgtagaagtggatgatgaaatcatcgtgcgtttgaatgatgagagctac
ccgacaatcagtttagaagaaaatcgctttaaggatagcggctatttaaaagaaaaatta
aaagaggctaaagatttgattgatgcgctaaatttgagaaaagccacgatttataaaatc
ggtctcatgcttttagagtatcaatacgatttttttaagggtaaaaaattgcgcccttta
aaattattggatttagccaatgagtttaaccactctgtaagcacgatttcaagggccatt
tctaataaatatttggcatgcgaaagaggggttttccctattaagcatttctttagcacc
gccttagacaacagcgagacttcaaacgctgtgattaaagactatcttttagaattgatc
aaaaacgaagacaaaaaagagcctttgagcgacgctaagattttagaactcattgaagaa
aaattccatttgaaaatggtaagaagaacgatcaccaaataccgccaattgctcaacatc
gcttcttcaagcgaaaggaaaaagctctatttgatgcgcgcttga
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