Helicobacter pylori oki112: HPOKI112_05635
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Entry
HPOKI112_05635 CDS
T03723
Name
(GenBank) DEAD/DEAH box helicase
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpyc
Helicobacter pylori oki112
Pathway
hpyc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HPOKI112_05635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyc03400
]
HPOKI112_05635
Enzymes [BR:
hpyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPOKI112_05635
DNA repair and recombination proteins [BR:
hpyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HPOKI112_05635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
PriA_C
Helicase_C
Zn_ribbon_PriA
PriA_3primeBD
AAA_22
AAA_19
ADDB_N
nSTAND3
PhoH
AAA_7
AAA_30
CobU
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AHN36503
LinkDB
All DBs
Position
complement(1146900..1148759)
Genome browser
AA seq
619 aa
AA seq
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MFYHLIAPLKNKTPPLTYFSKERHLKGALVNIHLRNKTLLGVVLEEVSKPSFECLELEKT
PYFLLPFQIELALFIAQYYSANLSSVLNLFTPFKECDLVGLEKIEPVLNALSQTQTNALK
ELQKHSASLLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIALTPQMQQRLKRVFKEN
LGLWHSKLSQAQKKQFLEKLYSQEIKLVVGTRSALFLPLKELGLIIVDEEHDFSYKSHQS
PMYNARDLCLYLSHKFPIQVILGSATPSLNSYKRFKDKALVRLKGRYTPTQKNIIFEKTE
RFITPKLLEALKQVIDKNEQAIIFVPTRANFKTLLCQNCYKSVQCPFCSVNMSLHLKTHK
LMCHYCHFSSPIPKICSACQSEVLVGKRIGTMQVLNELEGLLKGAKIAILDKDHTSTPKK
LHNILNDFNAQKTNILIGTQMISKGHDYAKVSLAVVLGIDNIIKSNSYRALEEGVSLLYQ
IAGRSARQISGQVFIQSTETDLLENFLEDYEDFLQYELQERCELYPPFSRLCLLEFKHKN
EEKAQQLSLKASQTLSSCLEKGVTLSSFKAPIEKIASSYRYLILLRSKNPLSLIKSVHAF
LKTAPNIPCSVNMDPVDIF
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgttctatcacttaatcgctcctttaaagaacaaaaccccccctttaacttacttttct
aaagagcgacaccttaaaggggcgttagtcaatatccatttaaggaataaaacgcttttg
ggcgtcgttcttgaagaagtttcaaaaccctcttttgaatgcctagaattagaaaaaacc
ccttattttttactcccctttcaaatagagctcgctctatttatcgctcaatattactcg
gctaatctttcttcagtcttaaatctttttaccccttttaaagaatgcgatttggtgggg
ttagaaaaaattgagcccgttcttaatgcgttaagccaaacgcaaacaaacgctttaaaa
gaattgcaaaaacattcagcaagtttgctctttggcgatacgggtagcggaaaaaccgag
atttatatgcattcaatcgctcaaactttagagcaaaaaaaaagcgctttattgttagtg
ccagaaatcgccctcacccctcaaatgcaacaacgccttaaaagggtctttaaagaaaat
ttaggcttgtggcatagcaaactctctcaagcccaaaaaaaacaatttttagaaaagctt
tattcgcaagaaatcaaattggtggtaggcacacgaagtgcgttgtttttaccccttaag
gagttgggtttaatcattgtagatgaagagcatgacttttcttataaatctcatcaaagc
cctatgtataacgctagggatttatgcttgtatttatcccataaattccctattcaagtg
attttaggctctgctacgccaagtctaaatagttacaaacgctttaaagataaggcttta
gtgcgcttaaaggggcgctacacgcctacgcaaaaaaacattatttttgaaaaaaccgag
cgttttatcacgcccaaactcctagaagcgctaaaacaagttatagacaaaaacgagcaa
gccattatttttgtgcctacaagagctaatttcaaaaccttgctgtgtcaaaattgttat
aaaagcgttcaatgccccttttgcagcgtgaatatgagtttgcatttaaaaacccacaaa
ctcatgtgccactattgccatttttcaagccctatccctaaaatttgcagcgcgtgtcaa
agcgaggttttagtgggtaaaaggataggcaccatgcaagtgttgaacgagttggaaggc
cttttgaaaggcgctaaaatagccattttagataaagatcacaccagcacgccaaaaaaa
ctccacaatattttaaacgatttcaacgctcaaaaaaccaatatcttaatcggcactcaa
atgataagcaaagggcatgattacgctaaagtgagtttagcggttgttttaggcatagac
aatatcattaaatccaatagttacagggctttagaagaaggtgtgtcgctactttatcaa
atcgctgggaggagcgctaggcaaatttctggccaagtgttcattcaaagcaccgaaacg
gatctattagaaaatttcttagaagattatgaagattttttacaatacgaattgcaagaa
aggtgcgaactctacccgcctttttcaaggctgtgtttattagagtttaagcataaaaac
gaagaaaaagcccaacaattgagcctaaaagcctctcaaaccctttcttcatgtttagaa
aagggcgtaacgctctctagctttaaagcccccattgaaaaaatcgcttcttcttaccgc
taccttattttattgcgttccaaaaaccctttaagcctaatcaaaagcgtgcatgcgttt
ttaaaaaccgctcctaatatcccttgcagcgtgaatatggatcctgtggatattttttaa
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