Helicobacter pylori oki112: HPOKI112_05885
Help
Entry
HPOKI112_05885 CDS
T03723
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hpyc
Helicobacter pylori oki112
Pathway
hpyc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOKI112_05885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyc03400
]
HPOKI112_05885
DNA repair and recombination proteins [BR:
hpyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPOKI112_05885
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HPOKI112_05885
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
Kinesin
DUF87
AAA_7
Microtub_bd
SWI2_SNF2
HAM1_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHN36547
LinkDB
All DBs
Position
complement(1196404..1198395)
Genome browser
AA seq
663 aa
AA seq
DB search
MRVLKMPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQT
NKPTLIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSIN
DDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKL
VEMGYSRNEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIK
RLDSIMLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEM
ISTTGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAG
DMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQII
RPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKA
RYMHSEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSET
SLIQTMGRAARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFNKLHNITPKTVTRAL
EEELKLRDDEIKIAKALKKNKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL
RTL
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgcgagttttaaagatgcctttatttgatttaaaaagcccttacccaccagcaggcgat
cagccccaagccatagaagctttaacaaaaagcttgaaaaataacaaccattatcaaact
ctagtgggggttacagggagcggtaagacttatacgatggccaatatcatcgctcaaacc
aataaacccactttgatcatgagccataataagaccttatgcgcacagctttatagcgag
tttaaggcgtttttcccgcataatagggtggagtattttatctcccactttgattactac
cagcctgaaagctatatccctaggagggatttatttattgaaaaagacagctctattaac
gatgatttagagcgtttgagattgagcgcgaccacctcacttttaggttatgatgatgtg
atcgtgatagcgagcgtttcggctaattatggtttgggtaaccctgaagaatatttaaaa
gtcatggaaaaaatcaaagtgggtgagaagcgcgcttacaagagctttttattaaagcta
gtagaaatgggttatagccgtaatgaagtggtgtttgatagggggagctttagagcgatg
ggggaatgtgtggatattttccccgcttataatgacgctgaatttattaggattgaattt
tttggcgatgagatagaaaggattgcagtctttgacgctttagaaagaaatgaaatcaaa
cgcttggattctattatgctttatgcggccagtcagtttgccgtagggagcgagaggctg
aatttagccattaaaagcattgaagatgaactcgctttaagattgaaattttttaaagag
caggataaaatgcttgaatacaaccgcctcaaacaacgcaccgagcatgatttagaaatg
attagcacgaccggtgtgtgtaagggcattgaaaattacgcgcgccatttcaccggtaaa
gcccctaacgaaacgcctttttgcttgtttgattatttagggatatttgagcgggagttt
ttagtcattgtagatgaaagccatgtgagtttgccgcagtttggagggatgtatgcaggg
gatatgagcaggaaaagcgttttagtggaatatggttttagattgcctagcgctttagac
aaccgccctttaaaatttgatgaatttatccataaaaattgccagttcctttttgtgtcc
gctacgcccaataagctcgaattagagctttccaaaaagaatgtcgctgagcaaatcatt
cgccctacagggcttttagaccctaaatttgaagtgcgagacagcgataagcaggtccag
gatttatttgatgaaatcaagttagtggtggccagagatgaaagggtgctcatcaccacg
ctcactaaaaaaatggcagaagaattgtgcaaatattatgctgaatggggcttgaaagcg
cgttacatgcatagtgaaattgatgcgattgaaagaaatcacatcatccgctctttaagg
cttaaagaatttgatattttaatagggatcaatcttttaagagaagggttggatttgcct
gaagtttctttagtagcgatcatggatgcggataaagaagggtttttaaggagtgaaaca
agcctcattcaaaccatggggcgagccgctagaaacgccaatggcaaggttttattatac
gctaaaaaaaccactcaaagcatgcaaaaagcctttgaaattacgagctacaggcgcgct
aagcaagaagagttcaataagcttcacaatatcacccccaaaaccgttactcgcgcttta
gaagaggagttgaaattaagagacgatgagattaaaatcgctaaagccttaaaaaagaac
aaaatccctaaaagtgaaagggaaaaaatcattaaagaactggataaaaaaatgcgagaa
tgcgcgaaaaatttggattttgaagaagcgatgcgtttgagagatgaaatcgctaaatta
agaacgctttaa
DBGET
integrated database retrieval system
