Helicobacter pylori oki112: HPOKI112_07490
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Entry
HPOKI112_07490 CDS
T03723
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpyc
Helicobacter pylori oki112
Pathway
hpyc03420
Nucleotide excision repair
hpyc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOKI112_07490
03430 Mismatch repair
HPOKI112_07490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyc03400
]
HPOKI112_07490
Enzymes [BR:
hpyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPOKI112_07490
DNA repair and recombination proteins [BR:
hpyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPOKI112_07490
MMR (mismatch excision repair)
Other MMR factors
HPOKI112_07490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
AHN36837
LinkDB
All DBs
Position
complement(1494801..1496846)
Genome browser
AA seq
681 aa
AA seq
DB search
MDFEKSILDHLNDAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLT
LTFTNKASKEMQERALKLLKNQALIPPLLCTFHRFGLLFLRQHMGLLKRACDFSVLDSDE
VKTLCKQLKISSFRASISQIKNGMMDLSMQDSECYKAYELYQNALKKDNLVDFDDLLFLS
LKILQDNEKLAKEISERYHYIMVDEYQDTNALQLEFLKKLSFTHHNLCVVGDDDQSIYGF
RGADISNILNFSKHFKGAKVVKLETNYRSSAEILACANSLISHNQHRHIKTLQSFKGSHK
SVVCKEYLTQKEESLDVAYQVKALLKNGENLENIAILYRLNGLSRSIEESLNALNIPYRL
IGAVSFYERAEVKDALAFMHLVAKKDDRFFIKRVLNKPSRGLGKITQELIFSLLDDEGLN
LEEALKLGAFKDKLNPKNEHALKKFTAMIGRLRETFEISVEEFCARFLEETNLLKSYEKE
DNYEEREGFVKELLSLLKEHFKTNPTHSLLDFLNESVLDVHNTENAQKVSCMSVHMSKGL
EFKHVFVIGLEEGFFPHRGFNQESDLEEERRLAYVAITRAKEGLQLSYVKERSYFGRKIS
CSSSVFLEEAKLLNQDNPPKQNYQKDAPIKVGDLIRHKIFGTGRVLGVEKGLSGLCLKIN
CGGNVYDKISEKFVEKVDNGF
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggattttgaaaaaagtattttagaccatttaaatgatgcgcaaaaaatcgctgcaagc
cacattcaagggccattgctcattttagcgggagctgggagcggtaagactaagacttta
acgagccgtttagcgtatttgattggcgcttgtggcgtgcctagcgagaacactttaacg
ctcactttcaccaataaagcgagtaaagaaatgcaagaaagggctttgaaattgttgaaa
aaccaagcccttatcccccccttgctttgcactttccatcgttttggtttgctgttttta
aggcaacacatgggccttttaaaaagagcgtgcgatttttcggtattagatagcgatgaa
gtcaaaacgctgtgcaaacagctcaaaatttcaagctttagagccagtatttctcaaatc
aaaaacggcatgatggatttaagcatgcaagatagcgaatgctataaagcgtatgagctt
tatcaaaacgcactcaaaaaagacaatttagtggattttgacgatttgctttttttaagc
cttaagattttacaagataatgaaaaactcgccaaagagattagcgagcgctaccattac
attatggtagatgagtatcaagacacgaacgccctgcaattggaatttttaaaaaaattg
agtttcacgcaccataatttgtgcgtggtgggcgatgacgatcagagcatttatggtttt
aggggggctgatatttctaacattttaaatttttccaagcattttaaaggggctaaggtg
gtgaaattagagaccaactaccgctctagcgctgaaattttagcgtgtgctaactccctt
attagccacaaccaacaccggcatattaaaacgcttcaaagtttcaaaggctcgcataaa
agcgtggtttgtaaagaatatttgacgcaaaaagaagagagcctggatgtggcttatcaa
gtcaaagcccttttaaagaatggcgaaaatttagaaaatatcgctattttgtatcgctta
aacgggcttagccgcagcattgaagagagcctaaacgctttgaatattccttataggctc
attggggcggtgagtttctatgaaagagcggaggttaaagacgctttggcgttcatgcat
ttagtggctaaaaaagacgatcgcttttttattaagcgtgttttaaacaagccttcaaga
ggccttggcaagatcactcaagagttgattttttctcttttagatgatgagggtttgaat
ttagaagaagcgttaaaacttggggcgtttaaagacaaattaaaccctaaaaacgaacac
gctttaaagaaattcaccgctatgatagggcgtttgagggagacttttgaaatttcagta
gaggagttttgcgctcggtttttagaagagactaaccttttaaaaagctatgaaaaagaa
gacaattacgaagaaagagagggttttgttaaagagcttttaagcttattgaaagagcat
tttaaaactaaccccacgcattctttactggattttttgaatgaaagcgtgctagatgtc
cataacacagaaaacgcgcaaaaagtgagttgcatgagcgtgcatatgagtaagggcttg
gagtttaagcatgtgtttgtgatcgggttagaagaagggtttttcccgcatagggggttc
aatcaagaaagcgatttagaagaagaaaggcgcttggcttatgtagcgatcactagggct
aaagaaggattgcagctctcttatgtcaaagagcgttcgtattttgggaggaaaatttct
tgctcgtcctctgtgtttttagaagaagccaagttgctcaatcaagacaacccccctaaa
cagaattatcaaaaagacgcgcccattaaagtgggggacttgatcaggcataagattttt
ggcactgggagggttttaggcgtagaaaaaggcttgagcggtttgtgcttgaaaatcaat
tgcggagggaatgtctatgataaaatctcagaaaaatttgtagaaaaagtggataacggg
ttttga
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