Helicobacter pylori oki128: HPOKI128_00200
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Entry
HPOKI128_00200 CDS
T03724
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpyd
Helicobacter pylori oki128
Pathway
hpyd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOKI128_00200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyd03400
]
HPOKI128_00200
Enzymes [BR:
hpyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPOKI128_00200
DNA repair and recombination proteins [BR:
hpyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPOKI128_00200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
PAC_bac
Motif
Other DBs
NCBI-ProteinID:
AHN37035
LinkDB
All DBs
Position
complement(30829..33828)
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESELAKEVISYFKPNTKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQEAIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDMECESIKEFDPTTQMSL
KEDLLEIEIPPTLFSLNEQSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPRALEEIQELASLNELDNERFKFLKVLENPQGYEDLEIHAHALESFIALHSNRKIT
LLTPNKTILDNAISTLEKSHIECIIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYWGEDKLLLPVENLHLIARYVAQS
DSVPIKDRLGKGSFLKLKAKVKTKLLEIASKIIELAAERNLILGKKMDTRLAELEIFKSH
AGFEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCVFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVGLGLIDVLVGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLEDLIPKLKIAI
LHSQINAHESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLSVSAFLNPELIASDSLRLD
LYRRLSLCENIDEVGQIHEEIEDRFGKTDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TITYSGEKKESLKAPSKDDNDILETLLKHLRAQISLKWH
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctttatagagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagagtccgagctcgctaaagaagtcataagctattttaagccaaat
accaaagccattcttttcccggaatttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggcttaagggagttttatcaagccttagaaaac
aagcaagaagcgatcatcattgcccctattagcgcgttattgcaccctttgcctaaaaaa
gaacttttagaaagctttaaaatcactcttttagaaaaatataaccttaaggatttgaaa
gacaagctcttttattatggttatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgcccaactctaaagcgtatcgattgagt
ttttttgacatggagtgtgagagcattaaggaatttgaccccaccactcaaatgagcctc
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttgaacgaacaatct
tataaggatttgaaaaccaaagtggagcaaagcccattaaatagcttttctaaagattta
accagttttggtttgtggtttttaggggaaaaagcaaacgatttgttgcatgcctataaa
agcgttataagccctagagctttagaagaaattcaagaattagcgagcttaaacgaattg
gataatgagcgtttcaaatttttaaaagttttagaaaacccgcaaggctatgaagattta
gaaatccatgcgcatgccctagaaagctttatagctttgcattcaaatcgtaaaatcacg
ctcctaacccctaataaaacgattttagacaatgcgataagcactcttgaaaaaagccat
attgaatgcatcatcgccccctttgtgctaaactttaaaacccctgatgggatttttatt
tcgctcaattcttttgaaaggaagaaaaaacgccaaaaatccaaactcgctttgaatgaa
ttgaatgcgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccaacacagcgttttagggagcaagagggattttttagaaatcgcttattggggcgaa
gacaaactgctattaccggtagaaaatttgcatctaatcgctcgctatgtggcgcaaagc
gatagcgtgccaattaaagaccggctagggaaagggagttttctcaaactgaaagctaaa
gttaaaaccaagcttttagagattgcaagcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggacacgcgtttagcggagttggaaatttttaaatcgcat
gcggggtttgaatacacaagcgatcaagaaaaggctatcgctgaaatttcaaaagactta
agctctcatagagtgatggacagattgttgagtggggatgtgggttttgggaaaacagaa
gtggcgatgcatgcgattttttgcgtgtttttgaacggctttcaaagtgctctagtcgtg
cctactactttattagcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaagcg
gtgggattagggctgattgatgttcttgtaggcacgcatgcgattttgggcgcaaaattt
aaaaacttgggcttagtggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagtaaaagcgtgcattttttaagcatgtccgctacgcctatcccg
cgcactctaaacatggcgctctctcaaattaaaggcattagctctttaaaaatcccgccc
acagacagaaaacccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attattcatagagaattgcgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagatttaatccctaaactcaaaatcgctatt
ttgcattcccaaattaacgctcatgagagcgaagaaatcatgctagagtttgctaaggga
aactatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgattattatagataacgcgcagaattttgggctggctgatttgcaccaattaaga
gggcgtgtggggagaggcaaaaaggaaggcttttgctatttcctcatagaagatcaaaaa
agtttgaatgagcaagccctaaaacgcttgctcgctttagaaaaaaattcgtatttaggc
agcggggagagtatcgcttatcatgatttagaaatcagggggggcgggaatttgcttggg
caagatcagagcgggcatattaaaaatatcggttatgcgctctatacgcgcatgcttgag
gatgcgatttatgaattgagtggggggaaaaaaaggcttgaaaagagcgtagaaatccaa
ttgagcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggttggat
ctataccgccgtttgagtttgtgtgagaatatagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaacagacgatttgagcgctcaatttttgcaaatcattacg
cttaaaattctagccaaccagcttggcatcattaaactttctaatttcaatcaaaacatc
accattacttatagcggtgaaaagaaagaaagcttaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgcgctcaaatttctttaaagtggcactaa
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