Helicobacter pylori oki128: HPOKI128_01355
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Entry
HPOKI128_01355 CDS
T03724
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpyd
Helicobacter pylori oki128
Pathway
hpyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPOKI128_01355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpyd03019
]
HPOKI128_01355
03009 Ribosome biogenesis [BR:
hpyd03009
]
HPOKI128_01355
Enzymes [BR:
hpyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPOKI128_01355
Messenger RNA biogenesis [BR:
hpyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPOKI128_01355
Ribosome biogenesis [BR:
hpyd03009
]
Prokaryotic type
rRNA helicases
HPOKI128_01355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHN37226
LinkDB
All DBs
Position
249247..250722
Genome browser
AA seq
491 aa
AA seq
DB search
MEFNQPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFISPSPIQEKAIPAVLQGRDVI
AQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVCV
YGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDD
IEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINE
HERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIM
AFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLV
TPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPSQ
LVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKTSNKKTHQHEQTRSFKKGQHKDRHPK
TNHHSKKPKRR
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaatcaaccactccctacagaaattgatgatgacgcttatcataagccgagt
tttaatgatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggtttcatt
tctccaagccccattcaagaaaaggccattccggctgttttgcaaggccgagatgtcatc
gcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcccattatcaacaac
cttaaaaacaaccacaccatagaggccttagtgatcacgcccaccagagaattagccatg
caaattagcgatgaaattttcaaattgggcaaacacactaggactaaaaccgtgtgcgtg
tatggaggtcagagcgttaaaaaacaatgcgaatttattaagaaaaacccccaagtgatg
atcgctacaccaggaaggttattggatcatttaaaaaacgaacgcatccataaatttgtg
cctaaagtggtcgttttagatgaaagcgatgaaatgctggatatggggtttttagacgat
attgaagagatttttgactacctccctagcgaagcacagattttgcttttttcagccacg
atgccagagccgattaaaagactagcggataagattttagaaaaccctattaaaatccat
atcgctccttctaatatcactaacactgacatcacccaacgcttttatgtgatcaatgag
catgagagggctgaagcgatcatgcgccttttagacacccaagcgcccaaaaagagcatt
gttttcacgcgcaccaaaaaagaagccgatgaattgcaccagttccttgcttctaaaaat
tacaaaagcaccgccttgcatggggatatggatcaaagggatcggcgcgcttctatcatg
gcgtttaaaaaaaatgacgctgatgtgttggtggctacagatgtggcgagccgtgggcta
gacattagcggtgtaagccatgtgtttaattaccacttgcccctaaataccgagagctat
atccatcgcatcgggagaaccgggcgagcgggcaaaaaaggcatggcgatcactttagta
acccccttagaatacaaagagcttttacgcatgcaaaaagaaattgattcagagattgaa
ctttttgagatccccaccattaacgaaaatcagatcatcaaaaccttacatgacgctaaa
gtgtctgaagggatcatcagtctttatgaacagcttactgaaatctttgagccgtctcaa
ttggttttaaaacttttgagtttgcagtttgaaaccagcaaaattggcttaaaccagcaa
gaaattgatgcgattcaaaaccctaaagaaaaaacgccaaaaacctctaacaaaaaaacg
caccagcatgagcaaacgcgttctttcaaaaagggtcagcacaaagacagacaccctaaa
acaaaccaccattctaaaaaacccaaacgccgttaa
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