Helicobacter pylori oki128: HPOKI128_02605
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Entry
HPOKI128_02605 CDS
T03724
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hpyd
Helicobacter pylori oki128
Pathway
hpyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPOKI128_02605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpyd03021
]
HPOKI128_02605
03019 Messenger RNA biogenesis [BR:
hpyd03019
]
HPOKI128_02605
Transcription machinery [BR:
hpyd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HPOKI128_02605
Messenger RNA biogenesis [BR:
hpyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPOKI128_02605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA_28
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AHN37447
LinkDB
All DBs
Position
complement(502183..503499)
Genome browser
AA seq
438 aa
AA seq
DB search
MNENAPAHKSPHKVKTHTPVSGYHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEI
LKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVT
GQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRM
LDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQR
SVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSS
GKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNS
EIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYS
KMQQTKDNEEFLNLMNEK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaacgcacctgcacacaagagtccgcacaaagtcaaaacacacacgccagtg
agcggttatcacattgaagatttacgcacctaccctactgaaaagcttttagaaatcgct
aacaagctcaaagtggaaaacccccaagaattcaaacgacaagacttgatgtttgaaatt
ttaaaaacccaagttacgcaaggcggatatattctttttaccgggattttagaaatcatg
cctgatggctatggctttttaagggggtttgatgggagtttttcagacgggcataacgac
acttatgtcagcccttctcaaatcaggcgttttgctttaaggaatggcgatattgttacc
ggtcaagtgcgatcccccaaagaccaggaaaaatactacgcccttttaaaaatagaagcc
atcaattatttgccttcagatgagattaaaaaccgccctttgtttgacaatctaacccct
ctattccctgatgaacaaatcaaattagaatacgaacccactaaggttaccggcagaatg
ctagatttattcagccctgtggggaaaggtcaaagggccttgatcgtcgcgccaccaagg
actgggaaaacggagctgatgaaagaactcgcccaaggcatcacctctaaccaccctgaa
gtggagctgattatccttttagtggatgagcgccctgaagaagttacggatatgcaacga
agcgttaagggtcaagtttttagctccacttttgatttgcccgcaaacaaccacataaga
atcgctgaattagtcctagaaagggctaaaaggcgagtggaaatgggcaaagatgtggtg
gttttattagattctatcacccgtttagccagagcgtataacgctgtaacgccttcaagc
ggtaaggttttaagtgggggcgtggatgcgaacgccttgcacagacccaagcgctttttt
ggagccgcaaggaatattgaagaaggcgggagcttgacgattatcgctactgcattgatt
gaaacgggatctagaatggatgaggtgatttttgaagaatttaaaggcaccgggaatagc
gaaatcgttttagcgaggaatattgcggacaggcgcatttacccggcctttgatatttta
aaatccggcacacgaaaagataatatcttgcttggcaaagaccgcttgactaaagtgtgg
gttttaaggaatgtgatgcaacaaatggatgacatagaagccttaagctttgtgtattct
aaaatgcaacaaactaaggacaatgaagaatttttaaatttaatgaatgaaaaataa
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