Helicobacter pylori oki128: HPOKI128_03625
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Entry
HPOKI128_03625 CDS
T03724
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
hpyd
Helicobacter pylori oki128
Pathway
hpyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPOKI128_03625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpyd03019
]
HPOKI128_03625
Messenger RNA biogenesis [BR:
hpyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPOKI128_03625
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
UPF0242
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AHN37636
LinkDB
All DBs
Position
complement(724802..726391)
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AA seq
529 aa
AA seq
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MSSGLIYISLEVLVACLITALIMYYVMKRIYYARGQTILKGASAKAKLMEFQAKSFVEAE
EMRMKSQECKLQQQYENKNLQLQTHFEKKEAHLKHLEAQHKEFVRDEKRYLEKEKQELEK
ERQILEQERENFKRQRAVCKEAQAKALDAMLNYLAYTKDEIKNMVLEQLEEELEAQKSAL
IKRYEKEAKEEGKKKSYAILAEATARFAGNYATENLTTRIALPCSDYIGRVIGKDGKNIE
AFEKVSGVDIEFSEGSSELYLSSFNLYRRKVASETLKILIEDGRIQPNRIEEVYHRVARN
MEKELLSEGESVVLELELGAMEDELKILIGKMRYRSSFGQNALEHSKEVALLAGLIAEQL
GGDKKLARRAGILHDIGKALTQELGRDHVNLGVEVCKHHKEDPVVINAIYAHHGHEEIMS
VECASVCAADALSAGRPGARRKSDEEYAKRMQALEEIALEFDGVEKAYAMESGRELRVIV
KSNQVRDNQVPIIARKIAKKIEESTQYVGEVGVQVVRESRFKTTATLKQ
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgggttaatttacatttcattagaagtcttggtagcgtgtttgattaccgct
ctaatcatgtattatgtgatgaaaaggatctattatgctagagggcaaaccattttaaaa
ggcgcttcagctaaagccaaattaatggagtttcaagcgaaatcttttgtggaagctgaa
gagatgcgcatgaaaagccaagaatgcaaattgcaacagcaatacgaaaacaagaatttg
caactccaaacccattttgaaaaaaaagaagcgcatttgaagcatttagaagcgcagcac
aaagaatttgtaagggatgaaaaacgctatttagaaaaggaaaaacaagagcttgaaaaa
gaacgccaaattttagaacaagagagagaaaattttaaaagacagcgcgctgtttgcaaa
gaagctcaagccaaagcgctagatgcgatgcttaattacttggcttataccaaagatgaa
attaaaaacatggttttagagcaattagaagaagaattagaagcccaaaaaagcgcgtta
atcaagcgttatgaaaaagaagccaaagaagagggcaagaaaaaatcgtatgccatttta
gcggaagcgacagcccgttttgcgggtaattatgcgacagagaatttaacaactcgcatt
gctttgccttgctcagattatatcggtcgtgtgataggcaaagacgggaaaaatattgaa
gcgtttgaaaaggtcagtggggtggatatagaatttagcgaaggtagcagcgaattgtat
ttgtccagtttcaatctttatcggcgtaaagtggcgagcgagacgcttaaaattttaata
gaagacggccgtatccagcctaacaggattgaagaggtctatcatagagtcgcgcgcaac
atggaaaaagaattgctttctgaaggggagagcgtggtgttagaattagagcttggggct
atggaagatgagcttaaaattttaataggcaaaatgcgttatcgctccagttttgggcaa
aacgccttagagcattctaaagaagtcgctcttttagccggcttgattgcagagcaactt
ggaggggataaaaaactcgccagaagagccggtattttgcatgatattggtaaagcgctc
acccaagagcttgggagagaccatgtgaatttaggggttgaagtgtgtaagcaccataaa
gaagacccggttgtgatcaatgcgatttatgcccaccatgggcatgaagagatcatgagc
gtagagtgcgcgagcgtgtgcgcggctgatgcgctttcagcagggcgtcctggggctaga
agaaagagcgatgaagaatacgctaaacgcatgcaagctttagaagagatcgcgctagaa
tttgatggggtggaaaaagcgtatgcgatggagagcgggcgagaattaagagtgattgtc
aaatccaaccaagtcagggacaatcaagtgcctattattgccagaaagatcgctaaaaag
atagaagagagcactcagtatgtgggcgaagtgggcgtgcaagtggtgcgagaaagccgt
ttcaaaacgaccgctacgctcaagcaataa
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