Helicobacter pylori oki128: HPOKI128_05265
Help
Entry
HPOKI128_05265 CDS
T03724
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hpyd
Helicobacter pylori oki128
Pathway
hpyd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOKI128_05265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyd03400
]
HPOKI128_05265
DNA repair and recombination proteins [BR:
hpyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPOKI128_05265
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HPOKI128_05265
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
DUF87
AAA_7
AAA_30
Microtub_bd
Kinesin
HAM1_N
Motif
Other DBs
NCBI-ProteinID:
AHN37912
LinkDB
All DBs
Position
complement(1072040..1074031)
Genome browser
AA seq
663 aa
AA seq
DB search
MRVLKMPLFDLKSPYPPAGDQPKAIEVLTKSLKNNNHYQTLVGVTGSGKTYTMANIIANI
NKPTLIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSIN
DDLERLRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKL
VEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIK
RLDSVMLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEM
ISATGVCKGIENYARHFTGKATNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAG
DMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQII
RPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKA
RYMHSEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSET
SLIQTMGRAARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFNKLHNITPKTVTRAL
EEELKLRDDEVKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL
RTL
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgcgagttttaaagatgcctttatttgatttaaaaagcccttatccaccagcaggcgat
cagccaaaagccatagaagtcttaacgaagagcttaaaaaataacaaccattatcaaact
ttagtgggggttacagggagcggtaagacttatacgatggctaatatcatcgctaatatc
aacaaacccactctgatcatgagccataataagaccttatgcgcgcagctctatagcgaa
tttaaggcgtttttcccgcataatagggtggagtattttatctcccactttgattactac
cagcctgaaagctatatccctagaagggatttattcattgaaaaagacagctctattaat
gatgatttagagcgtttgaggttgagcgcggccacctcacttttaggttatgatgatgtg
atcgtgatagcgagcgtttcggctaattatggtttgggtaaccctgaagaatatttaaaa
gtcatggaaaaaatcaaagtgggcgagaagcgcgcttataagagctttttactcaagcta
gtagaaatgggttatagccgtaatgaagtggtgtttgataggggtagttttagagcgacc
ggagaatgcgtggatattttccccgcttataatgacgctgaatttatcaggattgaattt
tttggcgatgagatagaaaggattgctgtctttgacgctttagaaaaaaatgaaatcaag
cgcttggattctgtcatgctttatgcagccagtcagtttgctgtagggagtgagaggttg
aatttagccattaaaagcattgaagatgaactcgctctaagattgaaattttttaaagag
caggataaaatgcttgaatacaaccgcctcaaacaacgcaccgagcatgatttagaaatg
attagcgcaaccggtgtgtgtaagggcattgaaaattacgcgcgccattttacaggcaaa
gccactaatgaaacgcctttttgtttgtttgattatttaggtatatttgagcgggagttt
ttagtcattgtggatgaaagccatgtgagtttgccgcagtttggagggatgtatgcaggg
gatatgagcaggaaaagcgttttggtggaatatggttttagattgcctagcgctttagac
aaccgccctttaaaatttgatgaatttatccataaaaattgccagttcctttttgtgtct
gccacgcccaataagctagaattagagctttctaaaaagaatgtcgctgagcaaatcatt
cgccctacagggcttttagaccctaaatttgaagtgcgagacagcgataagcaagtccag
gatttatttgatgaaatcaagttagtggtggctagagatgaaagggtgcttatcaccacg
ctcactaaaaaaatggcagaagaattgtgtaaatattatgctgaatggggcttgaaggcg
cgttacatgcatagtgaaattgatgcgattgaaagaaatcacatcatccgctctttaagg
cttaaagaatttgatattttaatagggatcaatcttttaagagaagggttggatttgcct
gaagtttctttagtagcgatcatggatgcggataaagaagggtttttaaggagtgaaaca
agcctcattcaaaccatggggcgagccgctagaaacgccaatggcaaggttttattatac
gctaaaaaaaccactcaaagcatgcaaaaagcctttgaaattacgagctacaggcgcgct
aagcaagaagagttcaataagcttcacaatatcactcccaaaaccgttactcgcgcttta
gaagaggagttgaaattaagagacgatgaggttaaaatcgctaaagccttaaaaaaggac
aaaatccctaaaagtgaaagggaaaaaatcattaaagaactggataaaaaaatgcgagaa
tgcgcgaaaaatttggattttgaagaagcgatgcgtttgagagatgaaatcgctaaatta
agaacgctttaa
DBGET
integrated database retrieval system
