Helicobacter pylori oki128: HPOKI128_05835
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Entry
HPOKI128_05835 CDS
T03724
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hpyd
Helicobacter pylori oki128
Pathway
hpyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPOKI128_05835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpyd03019
]
HPOKI128_05835
03016 Transfer RNA biogenesis [BR:
hpyd03016
]
HPOKI128_05835
Enzymes [BR:
hpyd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HPOKI128_05835
Messenger RNA biogenesis [BR:
hpyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPOKI128_05835
Transfer RNA biogenesis [BR:
hpyd03016
]
Prokaryotic type
tRNA degradation factors
HPOKI128_05835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
Motif
Other DBs
NCBI-ProteinID:
AHN38007
LinkDB
All DBs
Position
complement(1181468..1183534)
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AA seq
688 aa
AA seq
DB search
MDFITITSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCTEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTKITLMVLSHDIEN
DLQVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPSTSLLNQSSLDLFVSGTKE
SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGII
FNERLLDLLKNQYFGEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVK
KTEIRRMIIKDKIRPDKRALEEVRPILIEGDLLPMAHSSILFTRGQTQSLVVGVLGADND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEAKE
KIVINFSHLPATEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDR
CQVVLKEGDSIRCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcacttctagtaacaaaaccgaagagttcgctctcaaacaagtg
gccaaacaagccaccagctctctaatgtatcgcttaggaaaaaccatcattttagcgagc
gtgtgcacagaaagagagcctgtgagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggaaagatcccgggcggctttgttaaaagagaaggcagagcg
caagattttgaaatcttaacctctaggcttatagacaggactttacgccctttattccct
aaagactaccgctaccctacaaagatcactttaatggttttaagccatgatattgaaaat
gacttgcaagtttctgctttaaacgctgcttcagccgctctctttttatcccatatcgct
cccattaaaagcgtgagcgcttgcaggatcgctaggattgataacgaatttatcattaac
cctagcacaagccttttgaatcaatccagtttggatctgttcgtgtccggcacaaaagag
agtttgaacatgatagaaatgcgctctttggggcaacaattaaacgctttagaagagcct
ttaatgctaaaagctttagaattggctcaaaaaagtttgaaagaaacttgcacgctttat
gaagagattttcacgccccaccaaaacgagttgcttttcaaagagagccaaggaataatt
tttaatgaaaggctgttagatttattaaaaaatcagtattttggtgaaatcattaaaggc
attgaaagttctgctttgagcgagcgagaaaacgttttcaatgaaattgccagaaaaatc
agtgaagcccactcagaattcagtttagaagaaattgaattgtctttagaaaaagtgaaa
aaaactgagataaggcgcatgatcattaaggataaaatccgcccggataagcgcgcgtta
gaagaagtgcggcccattttgatagagggcgatttgctccctatggcgcatagctccatt
ttattcactagggggcaaacgcaaagcttagtggtaggggttttaggcgcggataatgac
gctcaaacccatgagagtttggagcataaagcccctattaaagagcgcttcatgtttcat
tataatttccctcctttttgcgtgggtgaagcgagctctattggcgcgacttcaaggcgc
gaattagggcatgggaatttggctaaaagggccttagaaacgagtattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcaggctctttagccctttatgcaagcggtgtggaaatttatgatctagtcgct
ggggtggctatgggcatggtgagtgaagggcaagatcacgctattttaagcgatattagc
ggtttagaagacgcagaaggcgatatggattttaagattgccgggaatttagaaggcatt
acggccatgcaaatggataccaaaatgagcggtatccaattagaggttttataccaagct
ttactccaagctaaaaaagcgcgagagcatattttaaaaatcatgcatgaagcgaaagaa
aagattgtgatcaatttttcccatttgcctgcaacggagatttttaatgtcgcgcccgat
aaaattgtagaaattatcggtcaaggggggcgtgtgatcagagagatagtagaaaagttt
gaggttaaaattgatttgaataaaccgagcggtgaagtgaaaatcatggggaataaagaa
cgggttttaaaaacgaaggaatttattttaaactatttgcattctttagatcaagaattg
gagcaatacgctattgatgaggtgttagaagctcaagtgaagagaatcgtggattttggg
gcgtttttaagcttgcctaaggggggcgaaggcttgttaagaaagcaaaacatggacagg
tgtcaagtggttttaaaagaaggcgatagcatcaggtgtagggtgattagtttcaataag
ggtaaaatcgctttggatttggcgtaa
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