Helicobacter pylori oki128: HPOKI128_06605
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Entry
HPOKI128_06605 CDS
T03724
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpyd
Helicobacter pylori oki128
Pathway
hpyd03420
Nucleotide excision repair
hpyd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOKI128_06605
03430 Mismatch repair
HPOKI128_06605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyd03400
]
HPOKI128_06605
Enzymes [BR:
hpyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPOKI128_06605
DNA repair and recombination proteins [BR:
hpyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPOKI128_06605
MMR (mismatch excision repair)
Other MMR factors
HPOKI128_06605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
AHN38139
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All DBs
Position
1344875..1346920
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AA seq
681 aa
AA seq
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MDFEKSILNNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLT
LTFTNKASKEMQERALKLLKNQTLIPPLLCTFHRFGLLFLRQHMSLLKRACDFSVLDSDE
VKTLCKQLKISSFRASISQIKNGMIDLSMQDSECHKAYELYQNALKKDNLVDFDDLLFLS
LKILQDNETIAKETSERYHYIMVDEYQDTNALQLEFLKKLSFTHHNLCVVGDDDQSIYGF
RGADISNILNFSKHFKGANVVKLETNYRSSAEILACANSLISHNQHRHKKTLQSFKGSHK
SVVCKEYLTQKEESLDVAYQIKALLKKGENLENIAILYRLNGLSRSIEESLNALNIPYRL
IGAVSFYERAEVKDALAFMHLVAKKDDRFFIRRVLNKPSRGLGKITQEWIFSLLDGEDLN
LEEALKLGVFKGKLNPKNEYALNKFIAMIGHLREAFEISVEEFCARFLEETNLLKSYEKE
DNYEEREGFVKELLSLVKEHFKTNPTHSLLDFLNESVLDTHNTENAQKVSCMSVHMSKGL
EFKHVFVIGLEEGFFPYRGFNQESDLEEERRLAYVAITRAKEELQLSYVQERSYFGRKIS
CSPSVFLEEAKLLKQDNPPKQDYKKDAPIKVGDLIRHKLFGTGRVLGVEKGLSGLCLKIN
CGGNVYDKISAKFVEKVDNGF
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggattttgaaaaaagcattttaaataatttaaacgaagcgcaaaaaatcgccgcaagc
cacattcaagggcctttattgattttagcgggagcagggagcggtaagactaagacttta
acgagccgtttagcgtatttgattggcgcttgtggcgtgcctagcgagaacactttaacg
ctcactttcaccaataaagcgagcaaagaaatgcaagaaagggctttgaaattattgaaa
aaccaaacccttatcccccccttgctttgcactttccatcgttttggtttgctgttttta
aggcaacacatgagccttttaaaaagagcgtgcgatttttcggtgttagacagcgatgaa
gtgaaaacgctgtgcaaacagctcaaaatttcaagctttagagccagtatttctcaaatc
aaaaacggcatgattgatttgagcatgcaagatagcgaatgtcataaagcgtatgagctt
tatcaaaacgcacttaaaaaagacaatttagtggattttgacgatttgctttttttaagc
cttaagattttacaagataatgaaaccatcgccaaagaaactagcgagcgctaccattac
attatggtagatgagtatcaagacacgaacgccttgcaattagagtttttaaaaaaattg
agtttcacgcaccataatttgtgcgtggtgggcgatgacgatcagagcatttatggtttt
aggggggctgatatttctaacattttaaatttttccaagcattttaaaggggctaatgtg
gtgaaattagaaaccaactaccgctccagcgctgaaattttagcgtgcgctaactccctg
attagccataaccaacaccgccataaaaaaacgcttcaaagttttaaaggctcgcataaa
agcgtggtttgtaaagaatatttgacgcaaaaagaagagagcttggatgtggcttatcaa
atcaaagcccttttaaagaagggcgaaaatttagaaaatatcgctattttgtatcgctta
aacgggcttagccgcagcattgaagagagcttgaacgctttgaatatcccctataggctt
attggggcggtgagtttctatgaaagagcagaggttaaagacgctttggcgttcatgcat
ttagtggctaaaaaagacgatcgcttttttatcaggcgcgttttaaacaagccttcaaga
ggacttggcaagatcactcaagaatggattttttctcttttagatggtgaggatttgaat
ttagaagaagcgctaaaacttggggtgtttaaaggcaaattaaaccctaaaaacgaatac
gccttgaataaatttatcgccatgatagggcatttgagggaggcttttgaaatttcagta
gaggagttttgcgctcggtttttagaagaaaccaaccttttaaaaagctatgaaaaagaa
gacaattacgaagaaagagagggctttgttaaagagcttttaagcttagtgaaagagcat
tttaaaactaaccccacgcattctttattggattttttgaatgaaagcgttctagatacc
cataatacagaaaacgcgcaaaaagtgagttgcatgagcgtgcatatgagtaagggatta
gagtttaagcatgtgtttgtgatcgggttagaagaagggtttttcccgtataggggattc
aatcaagaaagcgatttagaagaagaaaggcgcttggcttacgtagcgatcactagggct
aaagaagaattgcaactctcttatgttcaagagcgttcgtattttgggaggaaaatctct
tgctcgccctctgtgtttttagaagaggccaagttgctcaaacaagacaacccccctaaa
caagattacaaaaaagatgcgcccattaaagtgggggacttgatcaggcataaacttttt
ggcaccggtagggttttaggcgtagaaaaaggcttgagcggtttgtgcttgaaaatcaat
tgcggagggaatgtctatgataaaatctcagcaaaatttgtagaaaaagtggataacggg
ttttga
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