Helicobacter pylori oki128: HPOKI128_06695
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Entry
HPOKI128_06695 CDS
T03724
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hpyd
Helicobacter pylori oki128
Pathway
hpyd03030
DNA replication
hpyd03430
Mismatch repair
hpyd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPOKI128_06695
03430 Mismatch repair
HPOKI128_06695
03440 Homologous recombination
HPOKI128_06695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpyd03032
]
HPOKI128_06695
03400 DNA repair and recombination proteins [BR:
hpyd03400
]
HPOKI128_06695
Enzymes [BR:
hpyd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPOKI128_06695
DNA replication proteins [BR:
hpyd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPOKI128_06695
DNA repair and recombination proteins [BR:
hpyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPOKI128_06695
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AHN38156
LinkDB
All DBs
Position
1363972..1367607
Genome browser
AA seq
1211 aa
AA seq
DB search
MKEDKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK
EGIKPIIGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFPR
INKKLLREHSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEYQEIFEDD
FYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTL
NDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPS
FKFTKAYAQNEGLNFEDDASYFAYKAREGLKERLVLVPKEKHDQYKECLEKEIEVITSMK
FPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPER
VSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEA
DDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWEYSLNLENLNR
NAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVI
DDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSSFE
DIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELESILKPTYGTIVYQEQVMQIV
QTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGY
GFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPP
HINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKGDYKSLEDFIS
RVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFG
AMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIKGFKNLVKSID
IEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLFEKQLSALEELDI
NKPLVFKCKIEEQEEVARLRLFEILDLESAREVKIPKARYKDPEKQKEEVREIPTIEILA
SSSCSLAIVLENDVKKEFLRQIKESALKHQGKRPLYLIIKDKGKQFKIQSDLMVNEKIKD
DFKGLEWRDLA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaggataaagccttcacgcatctgcacttgcacacagaatattcgcttttagat
ggggcgaacaagattaaaattctagccaaacgcattaaagaattgggcatgaaaagcgtg
agcgtaactgaccatgggaacatgtttggagcgattgatttttatacgagcatgaaaaaa
gaaggcattaagcctatcatcggcatggaagcgtatatccataatgacgacaacctttct
agcaaagaaaccaagcaacgcttccatttgtgcttattcgctaaaaaccaagagggctat
gaaaatttgatgttcttaagctctatggcgtatttagaagggttttattatttcccgcgc
atcaataaaaagcttctaagggagcattctaaaggcattatcgcttctagtgcatgtttg
caaggggaagtcaattaccatttaaatactcataatgagagaaaccgcaagtatggggct
aaaggctatgatgaagccaaaaaaatcgcttgcgaataccaagagatttttgaagacgat
ttttatttagaaatcatgcgccatggcattttagatcagcgattcattgatgagcaagtc
attaaaatgtctttagaaacggggttaaaaatcatcgccaccaacgacacccactacacc
atgcctaatgacgccaaggctcaagaagtggcgatgtgcgtagcgatgggtaaaacccta
aacgataaggggcgcttgaaacactccgtgcatgagttttacatcaagtcccctgaagaa
atggcaaagctgtttgcagatattccagaagctttagaaaacacccaagaaatcgctgat
aaatgcgttttagagattgatttaaaagacgataaaaagaaccccccaacccctccaagc
ttcaaattcactaaagcttacgctcaaaatgaggggctgaattttgaagatgacgcttct
tattttgcttataaggctagagagggcttgaaggagcgcttggttttagtgcctaaagaa
aagcatgatcaatacaaagagtgcttagaaaaagaaattgaagtcattacgagcatgaaa
ttcccggggtatatgctgattgtgtgggattttatccgttacgctaaagaaatgggcatt
cctgtagggcctggtagggggagtgcggctgggagtttggtggcttttgctttaaaaatc
acggatattgaccccttgaaatacgatttgctctttgaaaggtttttaaaccctgaaaga
gtcagcatgcctgatattgatacggatttttgccagcgccggcgtaaggaaatcatagaa
tacatgattgaaaaatacggcaaatacaatgtggctcaagtcatcacctttaataagatg
ttggctaaaggcgtgatcagagatgtcgcaagggttttggacatgccctataaagaagct
gatgattttgccaaactcatacccaatcgcttaggcatcacgcttaagggctatgaaaaa
aatggcgagttcatagagggggcgtgggaattagagcctaaaatcaaggaattagtagag
agtaatgaattagccaaacaagtgtgggaatattcgctcaatttagagaatttgaatcgc
aacgcaggcgtgcatgccgcagccttagtggtggatagccaaaaagagttgtggcacaaa
acccctttatttgcctctgaaaaaaccggcggtatcgttacgcaatattccatgaagtat
ttagagccggtggatttgattaagtttgactttttggggcttaaaaccttgaccgtgatt
gatgatgcgcttaaaatcattaaaacgcagcacaaaattagcgtggattttttatcgttg
gatatggacgatccgaaagtgtataaaacgatccaaagcggggatacggtggggatattc
cagattgaatccgggatgtttcaagggcttaacaaacgcttaaggccttcaagctttgaa
gacattatcgctattatcgcgctaggcagaccggggcctatggaatcaggcatggtagat
gattttgtgaacagaaagcatggcattgagcctatcgcttatgcgtttaaagaattagag
tcgattttaaagcccacttacggcacgattgtctatcaagagcaagtgatgcaaatcgtg
caaactatcggcggttttagtttgggtgaagcggatctcatccgccgcgctatggggaaa
aaagacgctcaaatcatggcggacaataaggctaagtttgtagaaggcgctaaaaattta
gggcatgacggccaaaaggcggctaatttgtgggatttgatcgttaaatttgccggctat
ggtttcaacaaatcgcattcggccgcttatgcgatgatcactttccaaacggcgtattta
aagacttattacaagcatgaattcatggcagcgatgctcactagcgaatccaataagatt
gaatccgtggcacgctatattgatgaggttagggctttagaaattgaagtgatgccccca
cacatcaattcttctatgcaagatttcagtgtggcggagtttaaaaatcaaaagggcgag
ctagaaaagaaaatcgtgtttggtttaggagcgattaaaggggttgggggtgagccgatt
aaaaacatcattgaagaaaggactaagggggattataagagtttagaagattttatttca
cgggtggatttttctaaactcactaaaaaatctttagagccattggtgaaatcagggagc
ttggataatttaggctacacccgaaaaaccatgctcgctaacttggatctgatctgtgat
gctgggcgcgctaaagacaaggctaatgaaatgatgcaagggggtaactccctttttggg
gcaatggatggcggaacaaaagagcaggttattttggacatgattgatttgggcgaacat
gacgctaaaacgcttttagaatgcgaatacgagactttaggcatccatgtttcaggcaat
cccttagacgagtttaaagaagaaattaagggctttaaaaatttagtcaaaagcattgat
attgaagagttagaaatcggctcgcaagcttatttactgggtaaaatcatggaagttaaa
aagaaaattggcaaacgaagcggtaagccttacggcacagcggacattttggacagatat
ggcaagtttgagctcatgctgtttgaaaagcaattgagcgctttagaagagttggatatt
aataagcctttagtgtttaaatgcaagattgaagagcaagaagaagtggcgcgattaagg
ctttttgaaatcttggatttagagagcgccagagaggttaaaatccctaaagcccgttat
aaagaccctgaaaagcaaaaagaagaggtgcgcgaaatccccaccattgaaatacttgcc
tctagttcttgctctttggcgatcgtgttagaaaacgatgtgaaaaaagaatttttaaga
caaatcaaagagagcgctttaaaacatcagggcaaacggcccttgtatttgatcatcaaa
gataagggcaagcaattcaaaatccaaagcgatttaatggtaaatgaaaagattaaggac
gattttaaagggttagagtggagggatttagcttga
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