Helicobacter pylori oki128: HPOKI128_07675
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Entry
HPOKI128_07675 CDS
T03724
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hpyd
Helicobacter pylori oki128
Pathway
hpyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPOKI128_07675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpyd03019
]
HPOKI128_07675
03016 Transfer RNA biogenesis [BR:
hpyd03016
]
HPOKI128_07675
Enzymes [BR:
hpyd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HPOKI128_07675
Messenger RNA biogenesis [BR:
hpyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPOKI128_07675
Transfer RNA biogenesis [BR:
hpyd03016
]
Prokaryotic type
tRNA degradation factors
HPOKI128_07675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
Motif
Other DBs
NCBI-ProteinID:
AHN38333
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All DBs
Position
1542295..1544229
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AA seq
644 aa
AA seq
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MQGFLRSLFFGVKKIPKSFASLIEKGVLKEALGCNKERYFLKEGFDIGRIEWAENKAFFI
SLAKNYPKDPFIKNLPSSFKTDALILCKIECSKKRPIAFFKAALLNTDHTMIAYLAKKNH
QIVAIPFKEPFKKPILLKHSQKSLLELPRNCVVKIDLKKREISEILGALEDPLIDENLSL
SLFDRIKDFSKDCLNLAKHYAQLKASDFKNRINYSHIPFITIDPKDAKDFDDAIFYDQEK
RVLFVAVADVSEFVPKYSSLDKEARIRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDNLENARLFQGVIEVRANCTYEEINHFLTTQQSSLDKGLQQSLLGFLEMALKL
KKERLKKGFNFNSFENKLYLNKEGRIEKIETQKESNAHTLIEEAMLLANQSSANLLDKHF
QNKGIYRTHKEPSLKQQKRLYDKLFDYEIMRPKNMGFFSFLEHALKIAKEKKLEREVSRL
IIKSQNLALYSPMQESHFGLGFISYTHFTSPIRRYSDLALHRLLKELLFSQAKGCSYLLE
ETPELCAELNALQKKAALIERDFVKRKFARLALELLEKEFLGVVLEVKDWVVVGLKELIG
LKVLVKTNKVFKSLEKVCVKITHADLVLGQVWGEITERIKEHVS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaagggtttttaagaagcctgttttttggggttaaaaagatccctaaatcattcgct
tctctaatagaaaagggcgttttaaaagaagcacttggatgcaacaaggaacgctatttt
ttaaaagaaggctttgatataggcagaattgaatgggcagaaaataaggcgtttttcatt
tctttagcgaaaaattaccccaaagaccctttcatcaaaaacttaccctcttcttttaaa
acagacgctttgattttatgcaaaatagaatgttctaaaaaacgccccatagcctttttt
aaagccgctcttttaaacacagatcacacgatgatagcttacctggctaaaaaaaatcac
cagattgtggccatcccttttaaagagccttttaaaaaacccattcttttaaagcacagc
caaaaatccttattagaattgcctaggaattgcgtggtaaagatcgatcttaaaaagcgt
gaaatcagcgaaattttaggggctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacaggattaaggatttttcaaaagattgtttgaatttagctaaacattac
gcgcaacttaaagcgagcgattttaaaaacaggatcaattattctcacatccctttcatc
accattgaccccaaagacgctaaagattttgacgatgcgattttttatgatcaagaaaaa
agggttttgtttgtggctgttgctgatgtgagcgaatttgtgccgaaatattccagtttg
gataaagaagctaggattaggggctttagcgtgtatttccctaatagcgtgtatcccatg
ctgcctttgagcttgtctcaaggggcatgctcactaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctttagataatttggaaaacgcccgattgtttcaaggcgttatt
gaagttagggctaattgcacttatgaagaaatcaatcattttttaaccacccaacaaagc
tctttagataaaggtttgcaacaaagccttttggggtttttagaaatggctttaaagtta
aaaaaggagcgtttaaaaaaggggtttaatttcaattcgtttgaaaacaagctgtatttg
aataaagaagggcgtatagaaaaaattgaaacgcaaaaagaaagcaacgcgcacaccctt
atagaagaagccatgctattagccaaccaatctagtgcgaatttattggataagcatttt
caaaataaggggatataccgcacccataaagagccaagtttaaagcagcaaaaacgcctc
tacgacaagctttttgattatgagatcatgcgccctaaaaacatgggctttttttctttt
ttagagcatgctttaaagatagccaaagaaaagaagttagaaagagaagtttcgcgctta
atcattaaatctcaaaatttagccctttatagccctatgcaagaaagccattttggtttg
gggtttattagctatacgcatttcacttcgcccattagacgatacagcgatttagcctta
cacaggcttttaaaagaattgttattctctcaagctaaaggctgttcgtatttgctagaa
gaaacgcctgaattatgcgctgagttgaacgctttacaaaaaaaggccgctttgattgaa
agggattttgtcaaacgcaaattcgctcgcttagctttagaacttttagaaaaagaattt
ctaggcgttgttttagaggttaaagattgggtggtggtggggctaaaagaattaataggg
cttaaagttttagtcaaaacaaacaaggtttttaagtctttagaaaaggtgtgcgttaaa
atcacgcatgcggatttggttttagggcaagtttggggcgaaatcacagaaaggattaaa
gagcatgtatcgtaa
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