Helicobacter pylori oki154: HPOKI154_00200
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Entry
HPOKI154_00200 CDS
T03725
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpye
Helicobacter pylori oki154
Pathway
hpye03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOKI154_00200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpye03400
]
HPOKI154_00200
Enzymes [BR:
hpye01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPOKI154_00200
DNA repair and recombination proteins [BR:
hpye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPOKI154_00200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
PAC_bac
Motif
Other DBs
NCBI-ProteinID:
AHN38427
LinkDB
All DBs
Position
complement(30829..33828)
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESELAKEVISYFKPNTKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQEAIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDAECESIKEFDPTTQMSL
KEDLLEIEIPPTLFSLNEQSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPRALEEIQELASLNELDNERFKFLKVLENPQGYEDLEIHAHALESFIALHSNRKIT
LLAPNKTILDNAISALEKSHIECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVAQS
DSVPTKDRLGKGSFLKLKAKVKTKLLEIASKIIELAAERNLILGKKMDTHLAELEIFKSH
AGFEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVGLGLIDVLVGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLEDLIPKLKIAI
LHSQINAHESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLSVSAFLNPELIASDSLRLD
LYRRLSLCENIDEVGQIHEEIEDRFGKTDDLSTQFLQIITLKILANQLGIIKLSNFNQNI
TITYSDEKKESLKAPSKDDNDILETLLKHLRAQISLKRH
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctttatagagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagagtccgagctcgctaaagaagtcataagctattttaagccaaat
accaaagccattcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggcttaagggagttttatcaagccttagaaaac
aagcaagaagcgatcatcattgcccctattagcgcgttattgcaccctttgcctaaaaaa
gaacttttagaaagctttaaaatcactcttttagaaaaatataaccttaaggatttgaaa
gacaagctcttttattatggttatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgcccaattctaaagcgtatcgcttgagt
ttttttgatgcggagtgtgagagtattaaggaatttgaccccaccactcaaatgagcctc
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttaaacgaacaatct
tataaggatttgaaaaccaaagtggagcaaagcccattaaatagcttttctaaagattta
accagttttggtttgtggtttttaggggaaaaagcaaacgatttgttgcatgcctataaa
agcgttataagccctagagctttagaagaaattcaagaattagcgagcttaaacgagttg
gataatgagcgtttcaaatttttaaaagttttagaaaacccgcaaggctatgaagattta
gaaatccatgcgcatgccctagaaagctttatagctttgcattcaaatcgtaaaatcacg
ctcctagcccctaataaaacgattttagacaatgcgataagcgcgcttgaaaaaagccat
attgaatgcgtcatcgcgccctttgtgctaaactttaaaacccctgatgggatttttatt
tcactcaattcttttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgaa
ctgaatgcgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccaacacagcgttttagggagcaagagggattttttagaaatcgcttatttgggcgaa
gacaaactgctattaccggtagaaaatttgcatctgatcgctcgctatgtggcgcaaagc
gatagcgtgccaactaaagatcggctagggaaagggagttttctcaaactgaaagctaaa
gttaaaactaagcttttagagattgcaagcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggacacgcatttagcggagttggaaatctttaaatcgcat
gcggggtttgaatacacaagcgatcaagaaaaagccatcgctgaaatttcaaaagactta
agctctcatagagtgatggacagattgttgagtggggatgtgggttttgggaaaacagaa
gtggcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgctctagtcgtg
cctactactttattagcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtgggattagggctgattgatgttctggtaggcacgcatgcgattttgggtgcgaaattt
aaaaacttgggcttagtggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagtaaaagcgtgcattttttaagcatgtccgctacgcctatccca
cgcactctaaacatggcgctctctcaaattaaaggcatcagctctttaaaaatcccgccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attattcatagagaattgcgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagatttaatccctaaactcaaaatcgccatt
ttgcattcccaaattaacgctcatgagagcgaagaaatcatgctagagtttgctaaggga
aactatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgattattatagataatgcgcaaaattttgggctggctgatttgcaccaattaaga
gggcgtgtggggagaggcaaaaaagaaggattttgctatttcctcatagaagaccaaaaa
agtttgaatgaacaggctttaaaacgcttgctcgctttagaaaaaaattcgtatttaggc
agcggggagagtatcgcttatcatgatttagaaatcagggggggcgggaatttgctcggg
caagatcagagtgggcatattaaaaatatcggttatgcgctctatacgcgcatgcttgag
gatgcgatttatgaattgagtggggggaaaaaaaggcttgaaaagagcgtagaaatccaa
ttgagcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggttggat
ttgtaccgccgtttgagtttgtgtgaaaatatagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaacagacgatttgagcactcaatttttgcaaatcattacg
cttaaaattctagccaaccagcttggcatcattaaactttctaatttcaatcaaaacatc
accattacttatagcgatgaaaagaaagaaagtttgaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgcgctcaaatttctttaaagcggcactaa
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