Helicobacter pylori oki154: HPOKI154_03625
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Entry
HPOKI154_03625 CDS
T03725
Name
(GenBank) RNA polymerase sigma54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
hpye
Helicobacter pylori oki154
Pathway
hpye02020
Two-component system
hpye02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpye00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HPOKI154_03625
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPOKI154_03625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpye03021
]
HPOKI154_03625
Transcription machinery [BR:
hpye03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPOKI154_03625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF3288
Motif
Other DBs
NCBI-ProteinID:
AHN39032
LinkDB
All DBs
Position
complement(728776..730020)
Genome browser
AA seq
414 aa
AA seq
DB search
MAVLRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIENKRIKNFSDRF
SAKSSSDHLENFAIASKSLFETLESQIIPPLFPTETSQKIAMDIINGLDSEGYFEENIEE
RAKILGVESEVYEKVRQRFSYLNPAGIGARDVKESFLFQLESRELDNNELYEEVRKIILN
LEKHHEFSKDFYYEKALKILKSFKNPPAIEFLEKEIEVIPELFILEVDDEIIVRLNDESY
PTISLEENRFKDSAYLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQYDFFKGKKLRPL
KLLDLANEFNHSVSTISRAISNKYLACERGVFPIKHFFSTALDNSETSNAVIKDYLLELI
KNEDKKEPLSDAKILELIEEKFHLKMVRRTITKYRQLLNIASSSERKKLYLMRA
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcggttttacgcgcaaaccttagccctaaaaacaaattaaacgctaccctaaaaggg
tggctccccattttacaaagcgagcttgaagatttagaagaggtgttgaaacaaaacgcc
ctagataaccccttaatcaaaattgaaaacaaacgcatcaaaaattttagcgatcgcttt
agcgctaaaagtagtagcgatcatttagaaaatttcgcaattgcttctaaaagccttttt
gaaaccttagaatctcaaatcattccccccctctttcctactgaaacctctcaaaaaatc
gctatggatattatcaacgggctagatagtgaagggtattttgaagaaaacattgaagaa
agggctaaaattttaggggtagagagcgaagtttatgaaaaagtgcgccagcgtttcagt
tatcttaatcccgctggtattggcgctagagatgtgaaagagagctttttattccagcta
gagagtagggaattagacaataacgagctttatgaagaagtgcgaaaaatcattttaaat
ttagaaaaacaccatgaattttctaaagatttttattatgaaaaggctttaaagatttta
aaatcctttaaaaaccccccagccattgagtttttagaaaaagaaatagaggtcattccg
gagctttttattctagaagtggatgatgagatcatcgtgcgtttgaatgatgagagctac
ccgacgatcagtttagaagaaaatcgctttaaagatagcgcttatttaaaagaaaagtta
aaagaggctaaggatttgattgatgcactgaatttgagaaaagccacgatttataaaatc
ggcctcatgcttttagagtatcaatacgatttttttaagggtaaaaaattgcgcccttta
aaattattggatttagccaatgagtttaaccactctgtaagcacgatttcaagggccatt
tctaataaatatttggcatgcgaaaggggagttttccctattaaacatttctttagcacc
gccttagacaatagcgagacttcaaacgctgtgattaaagactatcttttagaattgatc
aaaaatgaagacaaaaaagagcctttgagcgacgctaagattttagaactcattgaagaa
aaattccatttgaaaatggtaagaagaacgatcactaaataccgccaactgctcaacatc
gcttcttcaagcgaaaggaaaaagctctatttgatgcgtgcttga
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