Helicobacter pylori oki422: HPOKI422_04270
Help
Entry
HPOKI422_04270 CDS
T03726
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hpyf
Helicobacter pylori oki422
Pathway
hpyf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPOKI422_04270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpyf03021
]
HPOKI422_04270
03019 Messenger RNA biogenesis [BR:
hpyf03019
]
HPOKI422_04270
Transcription machinery [BR:
hpyf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HPOKI422_04270
Messenger RNA biogenesis [BR:
hpyf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPOKI422_04270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
S1CSD-TOTE-2
AAA_28
AAA_22
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AHN40590
LinkDB
All DBs
Position
862027..863343
Genome browser
AA seq
438 aa
AA seq
DB search
MNENAPTHKSSHKVKTHTPVSGYHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEI
LKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVT
GQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRM
LDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQR
SVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSVTRLARAYNAVTPSS
GKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNS
EIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYS
KMQQTKDNEEFLNLMNEK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaacgcgcctacgcacaaaagttcgcacaaagtcaaaacacacacgccagtg
agcggttatcacattgaagatttacgcacctaccctactgaaaagcttttagaaatcgct
aacaagctcaaagtggaaaacccccaagaattcaaacgacaagacttgatgtttgaaatt
ttaaaaacccaagttacgcaaggcggatacattctttttaccgggattttagagatcatg
cctgatggctatggctttttaagagggtttgatgggagtttttcagatgggcataacgac
acttatgtcagcccttctcaaatcaggcgttttgctttaaggaatggcgatattgttacc
ggtcaagtgcgatcccctaaagaccaggaaaaatactacgcccttttaaaaatagaagcc
atcaattatttgccttcagatgagattaaaaaccgccctttgtttgataatctaaccccc
ctattcccggatgaacaaatcaaattagaatacgaacccactaaagttaccggcagaatg
ctagatttattcagccctgtggggaaaggtcaaagggctttgatcgtcgcaccaccaagg
actgggaaaacggagctcatgaaagaactcgcccaaggcatcacctctaaccaccctgaa
gtggagctgattatccttttagtggatgagcgccctgaagaagttacggatatgcaacga
agcgttaaaggtcaagtttttagctccacttttgatttgcccgcaaacaaccacataaga
atcgctgagttggtgctagaaagggcgaaaaggcgagtggaaatgggaaaagatgtggtg
gttttattggattctgtcacccgtttagccagagcgtataacgctgtaacgccttcaagc
ggtaaggttttaagtgggggcgtggatgcgaacgccttgcacagacccaagcgctttttt
ggagccgcaaggaatattgaagaaggcgggagtttgacgattatcgctacggcgttgatt
gaaacgggatctagaatggatgaagtgatttttgaagaatttaaaggcactgggaatagc
gaaatcgttttagcgaggaatattgcggacaggcgcatttacccagcctttgatatttta
aaatccggcacacgaaaagataatatcctgcttggcaaagaccgcttgactaaagtgtgg
gttttaaggaatgtgatgcaacaaatggacgatatagaagccttaagctttgtgtattct
aaaatgcaacaaactaaggacaatgaagaatttttaaacttaatgaatgaaaaataa
DBGET
integrated database retrieval system
