Helicobacter pylori oki422: HPOKI422_05350
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Entry
HPOKI422_05350 CDS
T03726
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hpyf
Helicobacter pylori oki422
Brite
KEGG Orthology (KO) [BR:
hpyf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpyf03032
]
HPOKI422_05350
03400 DNA repair and recombination proteins [BR:
hpyf03400
]
HPOKI422_05350
Enzymes [BR:
hpyf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HPOKI422_05350
DNA replication proteins [BR:
hpyf03032
]
Prokaryotic type
DNA Topoisomerases
HPOKI422_05350
DNA repair and recombination proteins [BR:
hpyf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPOKI422_05350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
ESCRT-II
Motif
Other DBs
NCBI-ProteinID:
AHN40760
LinkDB
All DBs
Position
complement(1085775..1087808)
Genome browser
AA seq
677 aa
AA seq
DB search
MKDSVIIIESPNKVEKIKQLTGAEVYATIGHFTNLIGVDIENNFACKFEIKEDKAKKINF
LINACRDKKVYIATDPDREGYGIGYQFYEKIKNVASEIYRAEFHEITPSGIENGLKNAVL
FSRSNTNLYQSFLGRIASDQVVGFALTSYLRKSLNLSELSAGRVQTPALALICQRDQEIR
DFDKLDAEEKVEYQIQASIVCNEKEVIIKHVRANEKNELVDFKFKDKNEASQFLQDLKDG
LGSMSVLALLKESLSIKEPKKPFTTSKLLSQASKSLKIPTKEIAQLAQKLFEAGLITYHR
TDSEFLSPEYLKEHEVFFEPIYPSIYQYREYKAGKNSQAEAHEAIRITHPHALKDLEKVC
SDAKISEELALKLYQLIYANTICSQSRNALYNQYDCIFKIKSESFKLSFKLLKEKGFLEI
EELIQGKEELSKEEQENEIENFSLKENDSVPLKEVFIKEIEKPSPKPYKESAFIPLLESE
GIGRPSTYASFLDLLLKRKYISIDTKTNTITPTSQGLEVISFFKKDKEVDFIALTSKDKS
KLGSTTKQFEECLDLIMRGEASYEKFMLEVISKLKSTAKFYQTQSTNNNMPTDKQLELIE
KICKDKKLQKPSQEILQNKEKCSDWIAEHVKEKPSQKQLDLVKKICEGCKLAMPINKVLN
DKFAISKWIDEHKKTKK
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatagcgtgattatcattgaaagccctaataaggttgaaaagattaaacaacta
acaggtgcggaagtttatgcaactatagggcattttactaaccttataggcgtagatatt
gaaaataattttgcttgtaagtttgaaatcaaagaagacaaggctaagaaaataaatttt
ttaatcaatgcttgtagggacaaaaaagtctatatcgctactgaccctgatagagagggc
tatggtattggttatcaattttatgaaaaaattaaaaatgtagctagtgaaatttatcgt
gcagaatttcatgagatcacaccaagcggtattgaaaacggcttaaaaaatgcggtgtta
ttttctcgttctaacactaatttataccaatcattcttaggcagaattgcaagcgatcag
gttgttggatttgctctaacaagctatttaagaaaaagtttaaatcttagtgaattgagc
gctggtagagtgcaaactccagctctagctttaatctgccaaagagatcaagaaataagg
gattttgataagttggatgctgaagaaaaagtagaatatcaaatccaagctagtattgtg
tgcaatgaaaaagaagtgattattaagcatgtaagggcgaatgaaaaaaacgaactagtg
gattttaaatttaaagacaaaaacgaagcatctcaatttttacaagatctaaaggacgga
ttaggatctatgagtgttctagctttattaaaagaaagtctatccattaaagaacccaaa
aaacctttcaccacctctaaacttttatcccaagcgagcaaatccttaaaaatacccact
aaagaaatcgcacaacttgctcaaaaactctttgaagctggtctcatcacttatcacaga
actgatagtgaatttttaagtcctgagtatctcaaagaacatgaagtgttttttgaacct
atttatccgagtatttatcaatacagggaatataaagctggcaaaaactcacaagctgaa
gcgcatgaagccataagaattacacatccgcatgctttaaaagacttagaaaaagtgtgc
agtgacgctaaaataagcgaagaattagcgctgaagttgtatcaacttatttatgccaat
acaatttgttctcaaagtagaaacgccttatacaatcaatatgattgtatctttaaaatc
aaaagcgagagttttaagctctctttcaaacttttaaaagaaaagggttttttagagatt
gaagaactcattcaaggcaaagaagaacttagcaaggaagaacaagaaaatgaaatagaa
aacttttcattaaaagaaaatgacagtgtcccattaaaagaagtttttattaaagaaata
gaaaaacccagtcctaaaccttataaagaaagtgcctttattcccttattagaaagcgag
gggattggtcgtcctagcacttatgcgagcttcttagatcttcttttgaagcgtaaatat
attagcattgatacaaaaactaacactatcacccctactagtcaaggattagaagtgatt
tcatttttcaaaaaagataaagaagtggatttcatcgctcttacaagcaaggataagagc
aaattaggaagcactaccaaacaatttgaagaatgtttggatttaatcatgagaggtgaa
gctagttatgaaaagttcatgcttgaagtcataagcaagttaaaaagcaccgccaagttt
tatcaaacacaatctactaacaataacatgcctactgataagcaacttgaactcatagaa
aaaatttgtaaagataaaaaattacaaaaacccagtcaagaaatcttgcagaacaaggaa
aaatgttctgattggattgcagagcatgttaaagaaaaacccagtcaaaaacaactggat
ctggttaaaaaaatttgtgaagggtgcaaattggcaatgcccatcaataaagtattgaat
gacaaattcgctatctctaaatggattgatgaacacaaaaagacaaagaaatga
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