Helicobacter pylori oki422: HPOKI422_06340
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Entry
HPOKI422_06340 CDS
T03726
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hpyf
Helicobacter pylori oki422
Pathway
hpyf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpyf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPOKI422_06340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpyf03021
]
HPOKI422_06340
03400 DNA repair and recombination proteins [BR:
hpyf03400
]
HPOKI422_06340
Enzymes [BR:
hpyf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPOKI422_06340
Transcription machinery [BR:
hpyf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPOKI422_06340
DNA repair and recombination proteins [BR:
hpyf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPOKI422_06340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AHN40926
LinkDB
All DBs
Position
complement(1284221..1292893)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVGAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDIFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSTGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIARMLEDKTRDFAKELRAKMLEIANAINEKDPLTIHALESCSDEE
LLEYAKDWSKGVKMAISVFEGISQEKFYKLFELAKIAMDGKMDLYDGCTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIVIKEDNRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIISTSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMTAIAKDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNSDQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGAIKYYVLEANHLERTHGIKKGDIVSEKGLFAVIADDNGREATRHYIARGSEILIDDN
SEVSANSVISKPTTNTFKTIATWDPYNTPIIADFKGKVSFVDVIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGANGEEMRYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFV
DKGKQILVHADEFVHAGEAMTDGVISSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRALEDDPKF
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccaaca
gatttagaagtccctaatttattattattacaacgagacagctatgattctttcttgtat
tccaaagatggcaaagagagcgggattgaaaaggtttttaaatccattttccctatccaa
gatgagcataaccgcatcactttagaatatgcgggttgcgaatttggcaagtctaaatac
actgttagagaagcgatggagaggggcattacctactctatccccctcaaaattaaagtg
cgcttgatcttgtgggaaaaagacaccaagagtggcgaaaagaacggcattaaggatatt
aaagaacaaagcattttcattcgtgagatccctttgatgacagaacgcacttcatttatt
atcaatggggtggagcgcgtggtggtcaatcagctccacagaagccccggtgtgattttc
aaagaagaagagtccagcacttctttaaacaagctcatttacacagggcaaatcatccct
gataggggttcgtggctgtattttgaatacgattctaaagatgttttgtatgctcgtatc
aacaaacgccgtaaagtgcctgttaccattttatttagggcgatggattatcaaaaacaa
gacatcattaaaatgttctacccgcttgttaaagtgcgttatgaaaacgataaatatttg
atcccgtttgcttcattagacgccaatcaaagaatggaatttgacttgaaagatcctcaa
ggcaaggttattcttttagcaggaaaaaagctcacttcaagaaagattaaagagcttaaa
gaaaaccatttggaatgggtggaataccctatggatattttactcaatcgtcatttggct
gaacctgttatggtggggaaagaagtcttattggacatgctcactcagctagataaaaac
aaattagaaaaaatccacgatttaggcgtgcaagaatttgtgatcatcaacgatctagcg
ttagggcatgacgcttccattatccattctttttcagccgattctgagtctttgaaatta
ctcaagcaaaccgaaaaaattgatgatgaaaacgctctagcggcgattcgtatccataag
gttatgaaaccaggcgatcctgttacgactgaagtggctaagcagtttgtcaaaaaactt
ttctttgatccagaacgctatgatttgaccatggtgggccgcatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacattacgactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaaaatcaaaaacaatcagggcaagattgatgacagggaccacttg
ggcaatcgtaggatcagagcggtaggggaactattggccaatgaattgcattcaggttta
gtgaaaatgcaaaagaccattaaagacaagctcactaccatgagcggggcttttgattcg
ctcatgccccatgacttggttaattctaaaatgatcacaagcaccatcatggaatttttc
atgggcggtcagctctcgcaatttatggatcaaacgaaccccttgagtgaggttacgcac
aaacgccgcctttcagcactcggtgaagggggattggtgaaagacagggtagggtttgaa
gccagagatgtgcaccccacgcattatggccgaatttgtcccattgagaccccagaaggt
caaaatatcggtctgatcaacaccctttccactttcacaagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggcaaggtcgtgggtgagacgatttatttg
accgctattcaagaagacagccacatcatcgctcccgcaagcacccccattgatgaagag
ggtaatattttaggcgatttgattgaaacgcgcgtggaaggcgagatcgttttaaacgaa
aaaagcaaagtaaccttaatggatttaagctctagcatgctagtaggggtagctgcatcg
ctcattcctttcttagagcatgatgacgccaaccgtgccttaatggggactaacatgcag
cgccaagcggtccccttattaagaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaagccaatcgcgcaggcgttgtagaaaaa
attgattctaaaaatatttatattttaggcgaaggcaaagaagaagcctatattgatgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagtttcaatcaagtccctatc
gttaaagtgggcgataaagtgggagccgggcaaatcatcgctgatggccctagcatggat
agaggcgagttagcgttagggaaaaatgtgcgcgtggcgttcatgccttggaatggctat
aactttgaagacgccatcgtggtgagtgagcgcatcactaaagatgatattttcacttcc
acccatatttatgaaaaagaagtggatgctagggagcttaagcatggcgtagaagaattt
actgctgatattcctgatgtgaaagaagaagcactcgctcatcttgatgaaagcgggatc
gttaaagtaggcacttatgtgagcactggcatgattttagtgggtaagacttctcctaaa
ggcgagattaaaagcacgcctgaagaacggctcttaagggctatttttggggataaagcc
gggcatgtggtcaataagagtttgtattgccctcccagtttggaaggcacggtgattgat
gtgaaagtcttcactaaaaaaggctatgagaaagacgcgcgagttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgatcgcttgaccatgctcaatagagaa
gaattgttgcgcgttagttcgctcctttctcaagcgattttagaagagcctttcagccat
aatggcaaggattataaagaaggcgatcaaatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggctagtttggtgaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaataatttcttagagcaaaagaaagttttgggtgaagagcatgaagaaaag
ctctctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatattgtgccggttgcggatatgccttataccgctgatggcgag
cctgtggatattgtcttaaaccctttaggcgtgccaagccgcatgaatatcgggcagatt
ttagaaatgcatttaggcttagtggggaaagaatttgggaaacaaatcgctcgcatgcta
gaggataaaaccagagattttgccaaagaattgcgcgctaaaatgctagaaatcgctaac
gccattaatgaaaaagatcccttgacaatccatgcacttgagagttgttctgatgaagag
cttttggaatacgctaaagattggagcaagggcgttaagatggctatctctgtgtttgaa
ggcatctcgcaagaaaaattttacaagctatttgaattagctaagatcgctatggatggc
aaaatggatctgtatgacgggtgcacaggcgaaaaaatgagggagcgcgtgaatgtgggc
tacatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcaca
ggcccttatagcttagtaacgcaccaacccgttgggggtaaagcgctttttgggggtcaa
aggtttggggaaatggaagtgtgggcgttagaagcttatggcgcagcgcacactctaaaa
gaaatgctcaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggcgagagtgaaatccctgagactttttatgtcttgactaaa
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaggatgga
gcgcctaaacccattgtcattaaagaagataacaggcctaaagactttagctctttccag
ctcactctagccagccctgaaaaaatccattcttggagttatggggaagttaaaaagcca
gaaacgatcaattatcgcaccctaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccccactaaagattatgaatgcttgtgcggtaaatacaaaaagcctcgcttcaaa
gacattggcacatgcgaaaaatgcggcgtggcgatcacgcactctaaagtcaggcgtttt
agaatggggcatattgaattggccactcctgtagcgcatatctggtatgtcaattccttg
cctagccgtatcggcacgcttttgggcgttaagatgaaagacttagagcgcgtgttgtat
tatgaagcttatatcgttaaagaaccaggcgaagccgcttatgacaatgaaggcactaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagataggggatttgtagcgcaaatgggcggtgaagcgatcaaggatttgttagaagaa
attgatttgatcaccttattgcaaagtttgaaagaagaagtgaaagacaccaattccgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggt
aacaggcctgagtggatgatgctcacggttttaccggtattgccgccggatttaaggcct
ttagtcgcgctagatggcgggaagtttgcggtcagcgatgtgaatgaattgtatcgtcgt
gtcatcaatcgtaaccaacgcttgaaacgcctaatggagcttggggcgccagaaatcatt
gtgcgcaatgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgt
agcaccaatgcggttaaaggggctaacaaacgccctttaaaatcgctcagtgaaatcatt
aaaggcaagcaagggcgtttcaggcaaaaccttttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggttgggcctaatcttaaaatggatgaatgcgggttgcctaaaaac
atggcgttagaactcttcaaaccgcatttgttatccaagcttgaagagagaggttatgcc
accacgctcaaacaagctaaacgcatgattgaacaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgctactcaaccgcgctcctaccttgcacaag
caatccattcaagcgttccatccaaagctgattgacggcaaagcgatccaattgcacccg
ttagtgtgttcagcgttcaacgccgattttgacggggatcaaatggcggttcatgtgcct
ttaagccaagaagcgatcgctgaatgcaaggtgctgatgctaagctctatgaatatcctt
ttgcccgctagcggtaaagccgtagccattcctagccaggatatggttttagggctttat
tatctttctttagaaaagagtggggtcaagggcgagcataaacttttttctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggtttta
gatcaagggaatattatctctacgagcgcggggcgcatgatcattaagtccattttgcct
gattttatccctacggatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtcggcggtatcggcattactgcaacctttttggataattta
aaaacgcttggctttaggtatgcgactaaggctggtatttctatctctatggaagatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaagtagaggttaaaaaaatc
caacaacaatacgatcaagggttgctcactgaccaagagcgttacaataaaatcattgac
acttggactgaagtcaatgacaaaatgagtaaagaaatgatgaccgctatcgcaaaagat
aaagagggctttaactctatttatatgatggctgatagcggcgcaaggggtagcgcggcg
caaatccgtcagctttcagcgatgaggggtcttatgacaaagccggatggcagtatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggcgctagaaagggcttagcggatacggcgctaaaaaccgccaatgcggggtat
ttgacaagaaagctcattgatgtttcgcaaaatgtcaaggtggtatctgatgattgtggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcccattacgaatgaa
atcttgctttatgcggacactttgattgatgaagagggcgctaaaaaggtggttgaagct
gggattaaatccattacgatccgcaccccagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctatggcttgaatttgggcgaaggcaagatgagctatccaggtgaagcggtg
ggcgtggtagctgcacaatctatcggggagcctggaactcagctcactttaaggactttc
catgtaggtgggacagcgagtaggagtcaggatgagcgcgaaattgtagcgagcaaagaa
ggttttgtgcgtttctacaaccttaggacttatacgaataaagagggtaaaaacattatc
gctaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaagtcgttgtgagcgtgaaaaatagcgat
caagaagctaaattcgttttaagaagaagcgatattgtcaagccgagcgaattagccggc
gttggcggtaagattgaggggaaagtgtatttgccttatgctagcgggcataaggtgcat
aagggaggaagtatcgctgatattatccaagagggctggaatgtgcctaatcgcatccct
tacgcgagcgaattgctagtcaaggataatgaccctattgcgcaagatgtgtatgccaaa
gaaaaaggcgcaatcaaatactatgttttagaggctaaccatttagagcgcacccatggg
atcaagaagggcgatattgtgagcgaaaaaggcttgtttgcggtgatagctgatgataat
ggtagggaagccactcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgagcgctaatagcgtgatttctaaacccacgactaacactttcaaaacgatt
gccacatgggatccttacaacacccctatcattgcggactttaaaggtaaggtgagtttt
gtggatgttatcgcaggcgttacggtcgctgaaaaagaagacgaaaataccggtattact
agtttggtggtgaatgattacattccaagcggatacaaaccaagcttgtttttagaaggg
gctaatggcgaagagatgcgttatttcctagagccaaaaacttctatcgccattagcgat
ggctctagcgtggagcaggctgaagtgttagcgaaaatccctaaagcgaccgttaaatct
agggatattactgggggtctcccaagggtttctgaactctttgaagcgagaaaacccaag
cctaaagatgtggcgatcctttctgaagtggatgggatagtgagttttggcaaacccatt
cgcaataaagaacacatcatcgtaacctctaaagatggtcgttctatggattattttgtg
gataaaggtaagcaaattttagtgcatgccgatgaatttgtgcatgcgggagaagcgatg
acagatggagtaatctcaagccatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtatcgcaggcagggggtgagcattgcggac
aagcacattgaaatcattgtctctcaaatgctaaggcaagtgcgcatcttagacagcggg
gatagcaagtttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagccagcgattgctgaaccggtgcttttagggatcacc
agagcggctattgggagcgatagcatcatctcagcagcctcttttcaagaaacgactaaa
gttttaacagaagccagtatcgctatgaaaaaagactttttagaggatttgaaagagaat
gtggtgttggggagaatgatccctgtgggaacgggcatgtataagaataaaaaaatcgtg
ttaagagcgcttgaagatgaccctaaattttga
DBGET
integrated database retrieval system
