Helicobacter pylori oki673: HPOKI673_03845
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Entry
HPOKI673_03845 CDS
T03727
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
hpyg
Helicobacter pylori oki673
Pathway
hpyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPOKI673_03845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpyg03019
]
HPOKI673_03845
Messenger RNA biogenesis [BR:
hpyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPOKI673_03845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
KH_KhpA-B
UPF0242
Motif
Other DBs
NCBI-ProteinID:
AHN41973
LinkDB
All DBs
Position
complement(768091..769680)
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AA seq
529 aa
AA seq
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MSSGLIYISLEVLVACLITALIMYYVMKRIYYARGQTILKGASAKAKLMEFQAKSFVEAE
EMRMKSQECKLQQQYENKNLQLQTHFEKKEAHLKHLEAQHKEFVRDEKRYLEKEKQELEK
ERQILEQEKENFKRQRAVCKEAQAKALDAMLNYLAYTKDEIKNMVLEQLEEELEAQKSAL
IKRYEKEAKEEGKKKSYAILAEATAHFAGNYATENLTTRIALPCSDYIGRVIGKDGKNIE
AFEKVSGVDIEFSEGSSELYLSSFNLYRRKVASETLKILIEDGRIQPNRIEEVYHRVARN
MEKELLSEGESVVLELELGAMEDELKILIGKMRYRSSFGQNALQHSKEVALLAGLIAEQL
GGDKKLARRAGILHDIGKALTQEFGRDHVNLGVEVCKRHKEDPVVINAIYAHHGHEEIMS
VECASVCAADALSAGRPGARRKSDEEYAKRMQALEEIALEFDGVEKAYAMESGRELRVIV
KSNQVRDNQVPIIARKIAKKIEESAQYVGEVGVQVVRESRFKTTATLKQ
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgggttaatttacatttcattagaagtcttggtagcgtgtttgattaccgct
ctaatcatgtattatgtgatgaaaaggatctattatgctagagggcaaaccattttaaaa
ggcgcttcagctaaagccaaattaatggagtttcaagcgaaatcttttgtggaagctgaa
gagatgcgcatgaaaagccaagaatgcaaattgcaacagcaatacgaaaacaagaattta
caactccaaacccattttgaaaaaaaagaagcgcatttgaagcatttagaagcgcagcac
aaagaatttgtaagagatgaaaaacgctatttagaaaaggaaaaacaagagcttgaaaaa
gaacgccaaattttagagcaagaaaaagaaaattttaaaagacagcgtgctgtttgcaaa
gaagctcaagccaaagcgctagatgcgatgctcaattacttggcttataccaaagatgaa
attaaaaacatggttttagagcagctagaagaagaattagaagcacaaaaaagcgcgtta
atcaagcgttatgaaaaagaagccaaagaagagggcaagaaaaaatcgtatgccatttta
gcggaagcgacagcccattttgcgggtaattatgcgacagagaatttaacaactcgcatt
gctttgccttgctcagattatatcggtcgtgtgataggcaaagacggaaaaaatattgaa
gcgtttgaaaaggtcagtggggtggatatagaatttagcgaaggtagcagcgaattgtat
ttgtccagtttcaatctttatcggcgtaaagtggcgagcgagacgcttaaaattttaata
gaagacggccgtatccagcctaacaggattgaagaggtttatcatagagtcgcgcgcaac
atggaaaaagaattgctttctgaaggggagagcgtggtgttggaattagagcttggggct
atggaagatgagcttaaaattttaataggcaaaatgcgttatcgctccagttttgggcaa
aacgccttacagcattctaaagaagtcgctcttttagccggcttgattgcagagcaactt
ggaggggataaaaagcttgccagaagagccggtattttgcatgatattggtaaagcgctc
acccaagagtttgggagagaccatgtgaatttaggggttgaagtgtgtaagcgccataaa
gaagacccggttgtgattaatgcgatttatgcccaccatgggcatgaagagatcatgagc
gtagagtgtgcgagcgtgtgcgcggctgatgcgctttcagcagggcgtcctggggctaga
agaaagagcgatgaagaatacgctaaacgcatgcaagctttagaagagatcgcgctagaa
tttgatggggtggaaaaagcgtatgcgatggagagcgggcgagaattaagagtgattgtc
aaatccaaccaggttagggacaatcaagtgcctattattgccagaaagatcgctaaaaag
atagaagagagcgctcagtatgtgggcgaagtgggcgtgcaagtggtgcgagaaagccgt
ttcaaaacgaccgctacgcttaagcaataa
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