Helicobacter pylori oki828: HPOKI828_00515
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Entry
HPOKI828_00515 CDS
T03728
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hpyh
Helicobacter pylori oki828
Pathway
hpyh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpyh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPOKI828_00515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpyh03021
]
HPOKI828_00515
Transcription machinery [BR:
hpyh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPOKI828_00515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
MCR_beta_N
WYL_3
Sigma70_r4_2
HTH_25
Motif
Other DBs
NCBI-ProteinID:
AHN42819
LinkDB
All DBs
Position
complement(91633..93633)
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AA seq
666 aa
AA seq
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MKKKANEEKAPKKAKAEAAQENKTKESKTKESKTKESKIKETKAKEPVPVKKLSFNEALE
ELFANSLSDCVSYESIIQISAKVPTLAQVKKIKELCQKYQKKLVSSSEYAKKLNAIDKIK
KTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEIELSKQI
RLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSDSKKDDDSE
EDEENEEKKKVVSEKDKKRVEKVQESFKALDKAKKEWLKALEAPVDEKEDELVRLLTLAY
KRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDTLIANHKK
ILANITNMTKEDIIAQVPEATMVNVYMDLKKLFLTKEASEEGFDLDPNKLKEILEQIKRG
KLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFS
TYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVG
LSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKVQIESVL
DQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRIL
RNYLRI
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagctaacgaagaaaaagccccaaaaaaagccaaagcagaagccgcacaa
gaaaataaaaccaaagagagcaaaaccaaagagagcaaaaccaaagagagcaaaatcaaa
gaaactaaagcgaaagaacctgttcctgttaaaaagcttagttttaatgaagcgttagaa
gaattgttcgctaattccttaagcgattgcgtttcttatgagtctatcattcaaatcagt
gcgaaagtccccactctagcccaagtcaaaaaaatcaaagaattgtgccaaaaataccaa
aagaaattagtcagctcttcagaatacgctaaaaaactcaatgcgattgacaagattaaa
aaaactgaagaaaagcaaaaagttttagatgaagaattagaagatggctatgactttttg
aaagaaaaggattttttagagtggagcagaagcgatagcccggtgcgcatgtatttgcgc
gaaatgggggatataaagcttttaagcaaagatgaagagattgaattgagcaagcaaatc
cgcttgggcgaagacattattttagacgcgatttgctcggtgccgtatttgattgatttt
atctatgcgtataaagacgctttaatcaatcgtgaaagaagggttaaagagctttttagg
agctttgatgatgacgatgaaaatagcgtgagcgattctaaaaaagatgatgacagcgaa
gaagatgaagaaaacgaagaaaagaaaaaagtcgtttctgaaaaagacaagaagcgtgta
gaaaaggttcaagaaagctttaaagccctagataaggctaaaaaagaatggctcaaagcc
cttgaagcccctgtagatgaaaaagaagatgagctagtgcgtttattgaccctagcttac
aaacgccaaacgctcaaagacagactctatgacttagagcctaccagcaaactgattaat
gaattagtcaaaacgatggaaaccactttaaaaagcggcgatgggtttgaaaaagagttg
aaacgcttggaatacaaactgcccttattcaatgacaccctaatcgctaaccataaaaaa
atccttgccaatatcactaacatgactaaagaggacattatcgctcaagtgccagaagcg
actatggtgaacgtgtatatggatcttaaaaagctttttttgactaaagaagcgagcgaa
gagggctttgatctagaccccaacaagctaaaagaaattttagagcaaatcaaaagaggg
aaattgatttccgatcgcgctaaaaacaaaatggctaaatccaatttaaggttggtggtg
agcatcgctaaacgattcacgagcagaggcttgccattcttggatttgattcaagaaggt
aatatcggcttgatgaaagcggtggataagtttgagcatgaaaagggcttcaagttttct
acctatgcgacctggtggatcaagcaggctatcagcagagccatagccgatcaagcccgc
actatccgcatccccatccacatgattgataccattaatcgcatcaataaagtcatgcgc
aaacacattcaagaaaacggcaaagagcctgatttggaagtggtggctgaagaagtgggg
ctttcgttagataaagtgaagaatgtgattaaggttaccaaagagcctatcagtttggaa
accccagtcggcaatgatgatgacggcaaatttggggatttcgtggaagataaaaatatc
gttagctccattgatcacatcatgcgcgaagatttgaaagtgcaaattgaaagcgttttg
gatcagttgaatgagcgagaaaaagcggtgatccgcatgcgttttgggcttttagacgat
gaaagcgatcgcactttagaagagattggcaaggaattgaatgttactagagaaagggtg
cgccagattgaaagctctgcgattaaaaaattgagaagcccgcaatacgggcgcatttta
agaaactatttgcgcatttga
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