Helicobacter pylori oki828: HPOKI828_00660
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Entry
HPOKI828_00660 CDS
T03728
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hpyh
Helicobacter pylori oki828
Brite
KEGG Orthology (KO) [BR:
hpyh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpyh03032
]
HPOKI828_00660
03400 DNA repair and recombination proteins [BR:
hpyh03400
]
HPOKI828_00660
Enzymes [BR:
hpyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HPOKI828_00660
DNA replication proteins [BR:
hpyh03032
]
Prokaryotic type
DNA Topoisomerases
HPOKI828_00660
DNA repair and recombination proteins [BR:
hpyh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPOKI828_00660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF1272
Zn_ribbon_LysW
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
AHN42843
LinkDB
All DBs
Position
122494..124704
Genome browser
AA seq
736 aa
AA seq
DB search
MKHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDLSKFALGIKIDETGFTPNYVVDKDH
KELVKQIIELSKKASTTYIATDEDREGEAIGYHVACLIGGKLESYPRIVFHEITQNAILN
ALKTPRQIDMSKVNAQQARRFLDRIVGFKLSSLISSKIIKGLSAGRVQSAALKLVIDKER
EIKAFKPLTYFTLDAYFESHLEAQLISYKGNKLKAQELIDEKKAQEIKNELEKESYAISS
IVKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVATPQGVMGVITYMRT
DSLNIAKEALEEARNKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRPTSIILEPNALK
DYLKPEELKLYTLIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKLLFDGYYKILGN
DDKDKLLPNLKENDPIKLEKLESNAHVTEPPARYSEASLIKVLESLGIGRPSTYAPTISL
LQNRDYIKVEKKQISALESAFKVMEILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQV
LKDFYYPFMDKIEAGKKNIISQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKY
VKQTENANDGDKQELCEKCGGEMVQKFSRNGAFLACNNYPECKNTKSLKNTPNANEIIEG
VKCPECWGDIALKKSKKGSFYGCNNYPKCRFLSNHKPINKRCEKCHYLMSERIYRKKKAH
ECIQCKERVFLEEDDG
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaccttattattgtagaatcccccgcaaaagccaaaaccattaaaaattttttg
gataaaaattatgaagtcatcgcctctaaggggcatgttagggatttatccaaattcgct
ttaggcattaagattgatgaaacaggcttcactcctaattatgtcgtggataaagatcat
aaagagcttgtcaaacagatcatagagctttctaaaaaggcatctaccacctacatcgct
accgatgaagacagagaaggggaagcgataggctatcatgtggcatgcttgattgggggg
aaattagagagctatcctaggatcgtttttcatgagatcacgcaaaatgcgattttaaac
gctctaaaaaccccacgacaaattgacatgtcaaaagtcaatgcccaacaagccagacgc
tttttagatcggatcgtgggttttaagctcagctcgttgatttcatcaaaaatcattaaa
ggtttgagcgctgggcgggtgcaaagcgcggctttaaagcttgtgattgataaagagagg
gagatcaaagcctttaagcctttaacctacttcacgctagacgcttattttgagtcgcat
ttagaagcgcaactcattagctataagggtaacaaactcaaagcccaagaactcattgat
gaaaaaaaagctcaagagattaaaaatgagttggaaaaagaaagctacgctatttccagt
atcgttaaaaaatctaaaaaatcccccacaccaccccctttcatgacttctactttacag
caaagcgcttctagtcttttaggcttttcgcccacaaaaaccatgagtatcgctcaaaaa
ttgtatgagggcgtagccacaccgcaaggggttatgggggtgatcacttacatgaggacc
gatagcttgaatatcgctaaagaagctttagaagaagcgaggaataagattttaaaagac
tatggcaaagactacttaccccctaaagccaaagtctattccagcaagaataaaaacgcc
caagaagcccatgaagcgatcaggcccacttctattattttagagccaaacgctttaaaa
gactaccttaagcctgaagaattaaagctctataccttaatttacaaacgcttcttagct
tctcaaatgcaagacgctctttttgaaagccaaagcgtggttgtggcttgcgaaaaaggc
gagtttaaagccagtggcagaaaactcctttttgatggctattataaaattttaggcaat
gacgataaggacaaattgctccccaatttgaaagaaaacgaccccattaaattagaaaaa
ctagagagcaacgcccatgttacagaacctccagcgcgctattcagaagcgagcttgatt
aaagttttagaaagtttaggcataggcaggcccagcacctacgccccaacgatttccctc
ttacaaaacagagattacatcaaggtagaaaaaaagcaaatcagcgctttagagagcgct
tttaaggtgatggaaattttagaaaagcattttgaagaaatcgtggattccaaattcagc
gcttctttagaagaggaactggacaatatcgctcaaaataaagccgactatcagcaagtc
ttaaaggacttttattacccctttatggataaaattgaagctgggaaaaagaatatcatc
tctcaaaaagtgcatgaaaaaaccggccaatcatgccctaaatgtggtggggaattggtc
aaaaaaaatagccgttatggggagtttatcgcttgcaacaattaccctaaatgcaaatat
gtcaaacaaactgaaaacgccaatgatggagataagcaagaattgtgcgaaaaatgcgga
ggggaaatggtgcaaaaattcagcagaaacggggcgtttttagcttgcaacaactaccct
gaatgcaaaaacaccaaatcgttaaaaaacacccctaacgcaaacgaaataatagaaggc
gtaaaatgcccagaatgctggggggatattgccttaaaaaagagcaagaaaggctcgttt
tatggttgcaacaattaccctaaatgccgttttttatccaaccataagcccattaataag
cgttgtgaaaaatgccattatttgatgagtgaaagaatctatcgcaaaaaaaaggcgcat
gaatgcatccaatgcaaagagcgcgtgtttttagaggaagatgatggctaa
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