KEGG   Helicobacter pylori oki828: HPOKI828_02170
Entry
HPOKI828_02170    CDS       T03728                                 
Name
(GenBank) RNA polymerase sigma 70
  KO
K02405  RNA polymerase sigma factor FliA
Organism
hpyh  Helicobacter pylori oki828
Pathway
hpyh02020  Two-component system
hpyh02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:hpyh00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    HPOKI828_02170
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    HPOKI828_02170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hpyh03021]
    HPOKI828_02170
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:hpyh02035]
    HPOKI828_02170
Transcription machinery [BR:hpyh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     HPOKI828_02170
Bacterial motility proteins [BR:hpyh02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    HPOKI828_02170
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 UPF0122 Microp_apicomplexa_17 MarR MarR_2 KORA HTH_34 TetR_C_44 HTH_10 DUF3209 DUF4202 DUF7440 DUF4404
Other DBs
NCBI-ProteinID: AHN43121
LinkDB
Position
414066..414842
AA seq 258 aa
MILMMENRMPKEIQKTQTSETSEKNIEKVLNAYDKQQHHHQDALAIQYLPAVRAMAFRLK
ERLPSSIDFNDLVSIGTEELIKLARRYESALNDSFWRYAKTRVNGAMLDYLRSLDVISRS
NRKLIKSIDAEITKHLNEHGKEPSDAYLAEVLGENIEKIKEAKTASDIYALVPIDEQFNA
IEQDEITKKIEAEELLEHVQKALNQMSEREQILIQLYYFEELNLSEIKEILGITESRISQ
IIKEVIKKVRKSLGVDHG
NT seq 777 nt   +upstreamnt  +downstreamnt
atgattttgatgatggaaaatagaatgcccaaagaaattcaaaaaactcaaacaagcgaa
acaagcgaaaaaaatatagaaaaagttttgaacgcctatgataagcagcaacaccaccat
caagacgcgctcgctatccagtatttaccggccgtgcgcgctatggcgtttcgtttgaaa
gagcgcttgcctagctctattgattttaacgatctggtttctattggcactgaagaattg
attaaattagccaggcgttatgagagcgcgttaaacgattctttttggaggtatgctaaa
actcgtgtcaatggggcgatgttagattatttgcgttctttagatgtgatttctcgctcc
aatagaaagctgattaaaagcattgatgctgagattaccaaacaccttaatgagcatggg
aaagagcctagcgatgcgtatttggcggaggttttaggcgaaaatattgaaaaaataaaa
gaagccaaaacggcttcagatatttatgcgttagtgccaatagatgaacaattcaatgcg
attgagcaagatgagatcactaaaaaaattgaagcagaagagttgttagagcatgtccaa
aaagcgctgaatcaaatgagcgaaagagagcaaatccttatccagctttattactttgaa
gagttgaatttgagcgagattaaagagattttaggcattactgaatcgcgcatttctcaa
atcattaaagaagtgattaaaaaggtgcgtaaatccttaggagtggatcatggctga

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