Helicobacter pylori oki828: HPOKI828_02805
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Entry
HPOKI828_02805 CDS
T03728
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hpyh
Helicobacter pylori oki828
Pathway
hpyh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPOKI828_02805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpyh03021
]
HPOKI828_02805
03019 Messenger RNA biogenesis [BR:
hpyh03019
]
HPOKI828_02805
Transcription machinery [BR:
hpyh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HPOKI828_02805
Messenger RNA biogenesis [BR:
hpyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPOKI828_02805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA_28
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AHN43225
LinkDB
All DBs
Position
complement(548589..549905)
Genome browser
AA seq
438 aa
AA seq
DB search
MNENAPTHKSPHKVKTHTLVSGYHIEDLLTYPTEKLLEIANKLKVENPQEFKRQDLMFEI
LKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGYNDTYVSPSQIRRFALRNGDIVT
GQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRM
LDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQR
SVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSS
GKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNS
EIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWILRNVMQQMDDIEALSFVYS
KMQQTKDNEEFLNLMNEK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaacgcacctacgcataagagtccgcacaaagtcaaaacacacacgctagtg
agcggttatcacattgaagatttactcacctaccctactgaaaagcttttagaaatcgct
aacaagctcaaagtggaaaacccccaagaatttaaacgacaagacttgatgtttgaaatt
ttaaaaacccaagttacgcaaggcggatacattctttttaccgggattttagaaatcatg
cctgatggctatggctttttaagggggtttgatgggagtttttcagacgggtataacgac
acttatgtcagcccttctcaaatcaggcgttttgctttaaggaatggcgatattgttacc
ggtcaagtgcgatcccccaaagaccaggaaaaatactacgcccttttaaaaatagaagcc
atcaattatttgccttcagatgagattaaaaaccgccctttgtttgacaatctaaccccc
ttattccctgatgaacaaatcaaattagaatacgaacccactaaggttaccggcagaatg
ctagatttattcagccctgtggggaaaggtcaaagggctttaattgtcgcgccaccaagg
actgggaaaacggagctgatgaaagaactcgcccaaggcatcacctctaaccaccctgaa
gtggagctgattatccttttagtggatgagcgccctgaagaagttacggatatgcaacga
agcgttaagggtcaagtttttagctccacttttgatttgcccgcaaacaaccacataaga
atcgctgaattagtcctagaaagggctaaaaggcgagtggaaatgggaaaagatgtggtg
gttttattagattctatcacccgtttagccagagcgtataacgctgtaacgccttcaagc
ggtaaggttttaagtgggggcgtggatgcgaacgccttgcacagacccaagcgctttttt
ggagccgcaaggaatattgaagaaggcgggagcttgacgattatcgctactgcattgatt
gaaacgggatctagaatggatgaggtgatttttgaagaatttaaaggcaccgggaatagc
gaaatcgttttagcgaggaatattgcagacaggcgcatttacccggcctttgatatttta
aaatccggcacacgaaaagacaatatcttgcttggcaaagaccgcttgactaaagtgtgg
attttaaggaatgtgatgcaacaaatggatgacatagaagccttaagctttgtgtattct
aaaatgcaacaaactaaggacaatgaagaatttttaaatttaatgaatgaaaaataa
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