Helicobacter pylori oki828: HPOKI828_05545
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Entry
HPOKI828_05545 CDS
T03728
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hpyh
Helicobacter pylori oki828
Pathway
hpyh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOKI828_05545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyh03400
]
HPOKI828_05545
DNA repair and recombination proteins [BR:
hpyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPOKI828_05545
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HPOKI828_05545
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_7
Kinesin
DUF87
Microtub_bd
HAM1_N
Motif
Other DBs
NCBI-ProteinID:
AHN43695
LinkDB
All DBs
Position
complement(1119214..1121205)
Genome browser
AA seq
663 aa
AA seq
DB search
MRVLKMPLFDLKSPYPPAGDQPKAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANT
NKPTLIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSIN
DDLERLRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKL
VEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIK
RLDSVMLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEM
ISATGVCKGIENYARHFTGKAPNETPFCLFDYLGVFEREFLVIVDESHVSLPQFGGMYAG
DMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQII
RPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYTEWGLKV
RYMHSEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSET
SLIQTMGRAARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRAL
EEELKLRDGEIKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL
RTL
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgcgagttttaaagatgcctttatttgatttaaaaagcccttacccaccagcaggcgat
cagccaaaagccatagaagccttaacgaaaagcttgaaaaataacaaccattatcagact
ttagtgggggttacagggagcggtaaaacttatacgatggccaatatcatcgctaatacc
aataaacctactctgatcatgagccataataagaccttatgcgcgcagctctatagcgag
tttaaggcgtttttcccgcataatagggtggagtattttatctcccactttgattactac
cagcctgaaagctatatccctagaagggatctattcattgaaaaagacagctctattaat
gatgatttagagcgtttgaggttgagcgcggccacctcacttttaggttatgatgatgtg
attgtgatagcgagcgtttcggctaattatggtttgggtaaccctgaagaatatttaaaa
gtcatggaaaaaatcaaagtgggcgagaagcgcgcttataagagctttttactcaagcta
gtagaaatgggttatagccgtaatgaagtggtgtttgataggggtagttttagagcgacc
ggagaatgcgtggatattttccccgcttataatgacgctgaatttatcaggattgaattt
tttggcgatgagatagaaaggattgctgtctttgacgctttagaaaaaaatgaaatcaag
cgcttggattctgtcatgctttatgcggccagtcagtttgctgtagggagtgagaggctg
aatttagccattaaaagcattgaagatgaactcgctctaagattgaaattttttaaagag
caggataaaatgcttgaatacaaccgcctcaaacaacgcaccgagcatgatttagaaatg
attagtgcaaccggtgtgtgtaagggcattgaaaattacgcgcgccattttacaggcaaa
gcccctaatgaaacgcctttttgtttgtttgattatttaggggtatttgagcgggagttt
ttagtcattgtggatgaaagccatgtgagtttgccgcagtttggagggatgtatgcaggg
gatatgagcaggaaaagcgttttggtggaatatggttttagattgcctagcgctttagac
aaccgccctttaaaatttgatgaatttatccataaaaattgccagttcctttttgtgtcc
gccacacccaataagctagaattagagctttctcaaaagaatgtcgctgagcaaatcatt
cgccctacagggcttttagaccctaaatttgaagtgcgagacagcgataagcaagtccag
gatttatttgatgaaatcaagttagtggtggctagagatgaaagggtgcttatcaccacg
ctcactaaaaaaatggcagaagaattgtgcaaatattatactgaatggggcttgaaggtg
cgttacatgcatagtgaaattgatgcgattgaaagaaatcacatcatccgctctttaagg
cttaaagaatttgacattttaatagggatcaatctcttaagagaagggctggatttgcct
gaagtttctttagtagcgatcatggatgcggataaagaagggtttttaaggagtgaaaca
agcctcattcaaaccatggggcgagccgctagaaacgctaatggcaaggttttattatac
gctaaaaaaaccacccaaagcatgcaaaaagcctttgaaattacgagctacaggcgcgct
aagcaagaagagtttaataagcttcatcatatcacccccaaaaccgttactcgcgcttta
gaagaggagttgaaattaagagacggtgagattaaaatcgctaaagccttaaaaaaggac
aaaatacccaaaagtgaaagggaaaaaatcattaaagaactggataaaaaaatgcgagaa
tgcgcaaaaaatttggattttgaagaagcgatgcgtttgagggacgaaatcgctaaatta
agaacgctttaa
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