Helicobacter pylori UM037: K750_01315
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Entry
K750_01315 CDS
T02659
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hpyi
Helicobacter pylori UM037
Pathway
hpyi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K750_01315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpyi03019
]
K750_01315
Messenger RNA biogenesis [BR:
hpyi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K750_01315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
AGL69222
UniProt:
A0AB33Z7K3
LinkDB
All DBs
Position
complement(1340401..1342479)
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AA seq
692 aa
AA seq
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MTDNNQNNENHENSSENSKDHHEMRAGAFECFTNRKKRFRENTQKTGESSHHEVPSHHKK
EHRPNKKPNHHHKAKHAPQKTRNYAQEELDSNKVEGVTEILHVNERGTLGFHKELKKGVE
ANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPKE
GLFGVDILIPDFSYLHQVKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIG
SKFDEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGD
FKIDHTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQ
GRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIEAN
EVAKYPDNEILIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASVSA
VLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTA
IACGVPEKNIYLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVAS
LGVFVATIFVNKNKQALLESSQFSSLGLVGFKDEKHLIKEIQGGLEVLLKSSNAEILNNP
KKLEDHTRNFIRKALFKKFRKYPAIVCHAHAF
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgactgataacaaccaaaataatgaaaaccatgaaaacagcagtgaaaactcaaaagat
caccatgagatgcgagccggagcgtttgagtgcttcaccaaccgcaaaaagcgtttcaga
gaaaacacgcaaaaaaccggagagtcttcacaccatgaagtgccttcgcaccataaaaaa
gagcatcgccccaacaaaaagccaaaccaccaccacaaagctaaacacgccccccaaaag
actagaaattacgcccaagaagaattggatagcaacaaagtagagggcgttacggaaatt
ttgcatgtgaatgagagagggactttaggctttcataaggagttaaaaaagggcgttgaa
gcgaataacaagatccaagtggagcatctaaacccgcattataagatgaatctaaactct
aaagcgagcgttaaaatcacgcctttagggggcttgggtgagattggggggaacatgatg
gtcattgaaaccccaaaaagcgcgatcgtgattgatgcgggcatgagcttccctaaagag
gggctatttggcgtggatattttaatcccggatttttcctacttgcaccaagtcaaggac
aaaatcgccggtattatcatcacccatgcccatgaagatcacataggggccacgccttat
ttgtttaaagagctgcaattccccctttatggcacgcctttgagtttggggctgatcggg
agcaagtttgatgaacatggtttgaaaaaataccgctcgtattttaaaatcgtagaaaag
cgttgccccattagcgtgggcgaatttatcattgaatggatccacatcacgcattctatc
attgacagcagcgctttagcgatccaaactaaagccggaacgatcatccacaccggcgat
tttaaaatcgatcacaccccggtggataatttgcccacggatttgtatcgtttggcgcat
tatggcgaaaagggcgtgatgcttcttttaagcgattccaccaactcccataaatccggg
actacgccgagtgaaagcaccatagcgccggcttttgataccctttttaaagaagcgcaa
gggagggtgattatgagcaccttctctagcaatatccaccgggtctatcaagccatacaa
tacggcattaaatacaaccgcaagatcgctgtgatcgggcgctctatggaaaaaaaccta
gacatcgctagagaattgggctatatccatttgccttatcaatcttttattgaagccaat
gaagtcgctaaatacccagacaatgaaatcttaatcgtaacgaccggctcacaaggcgaa
accatgagcgcgctttatcgcatggcgactgatgagcaccgccacatttctatcaaaccc
aacgatttagtcatcatctccgctaaagccattcctggcaatgaagcgagcgtttcagcg
gtgttgaatttcttgatcaaaaaagaagccaaagtggcttatcaagaatttgacaatatc
catgtgagcgggcatgccgcccaagaagagcaaaagctcatgttaagactcattaagcct
aagtttttcttacccgtgcatggggaatataaccatgtcgcgcgccacaaacaaaccgct
attgcttgcggggtgcctgaaaaaaatatctatttaatggaagatggcgatcaagtggaa
gttggccctgcgttcattaaaaaagtcggcaccattaaaagcgggaaaagctatgtggat
aaccaaagcaatttaagtattgacactagcatcgtccaacaaagagaagaagtcgctagc
ttaggggtgtttgtggctacgatttttgtgaataaaaacaaacaagcgcttttagaaagc
tctcaattttccagtttagggcttgtgggctttaaagatgaaaagcatttgatcaaagaa
attcaagggggcttagaggtgttattgaaatccagcaacgccgaaattttgaataaccct
aaaaaattagaagatcacactcgtaatttcatcagaaaagcgctctttaaaaagtttaga
aaatacccggctatcgtttgtcatgcccatgctttttga
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