Helicobacter pylori UM037: K750_02200
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Entry
K750_02200 CDS
T02659
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hpyi
Helicobacter pylori UM037
Pathway
hpyi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K750_02200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpyi03019
]
K750_02200
03016 Transfer RNA biogenesis [BR:
hpyi03016
]
K750_02200
Enzymes [BR:
hpyi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K750_02200
Messenger RNA biogenesis [BR:
hpyi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K750_02200
Transfer RNA biogenesis [BR:
hpyi03016
]
Prokaryotic type
tRNA degradation factors
K750_02200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
Motif
Other DBs
NCBI-ProteinID:
AGL69395
UniProt:
A0AB33Z6V4
LinkDB
All DBs
Position
complement(1184012..1185946)
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AA seq
644 aa
AA seq
DB search
MQGFLRSLFFGVKKIPKRFAPLVEKGVLKEVLQSNKDRYFLKEGFDIGKIERTENKAFFI
SLAKNYPKDPLIKNLPPSFKTDALILCQIECSKKRPIAFFKAALLNADHTMIAYLAKEKN
QIVAIPFKEPFKKPISLKHSQRSLLALPRHCVIKIDLKKREISEILGALEDPLIDENLSL
SLFDRIKDFSKDCLNLAQHYAQLKASDFKDRINYSHIPFITIDPKDAKDFDDAIFYDQEK
RVLFVAVADVSEFVPKYSSLDKEARIRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDDLKNARLSQGVIEVRANCTYEEINYFLSAQQSSLDKDLQQSLLGFLEMALKL
KKERLKKGFNFNSFENKLYLNEEGRIEKIETEKESDAHTLIEEAMLLANQSSAGLLDEHF
QNKGIYRTHKEPSLEQQKRLYAKLFDYEIVRPKNMGFFPFLEHALKIAKEKSIEREVSRL
IIKSQNLALYSPMQESHFGLGFISYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLE
ETPELCAELNALQKKAALIERDFIKRKFARLALEFLEKEFLGVVLEVKDWVVVGLKEFIG
LKVLVKTNKVFKPLEKVRVTITHADLILGQVRGEITERIKEHVS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaagggtttttaagaagcctgttttttggggttaaaaagatccctaaacgattcgcc
cccctagtagaaaaaggcgttttaaaagaagtgcttcaatcaaataaggatcgctatttt
ttaaaagaaggctttgatataggcaaaattgagcggacagaaaataaggcgtttttcatt
tctttagcgaaaaattaccctaaagatcctttaatcaaaaacttacccccatcttttaaa
acagacgctttgattttatgccaaatagaatgttctaaaaaacgccccatagcctttttt
aaagccgctcttttaaatgcagatcacacgatgatagcttacttggctaaagaaaaaaac
cagattgtggctatcccttttaaagagccttttaaaaaacctatttctttaaagcacagc
caaagatccttattagcattgcccaggcattgcgtgataaagatcgatcttaaaaagcgt
gaaatcagcgaaattttaggggctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacaggattaaggatttttcaaaagattgcttgaatttagcccaacattac
gcgcaacttaaagcgagcgattttaaagacaggatcaattattctcacatcccttttatc
accattgaccccaaagacgctaaagattttgacgatgcgattttttatgatcaagaaaaa
agggttttatttgtggcggttgctgatgtgagcgaatttgtgccgaaatattccagtttg
gataaagaagctaggattaggggctttagcgtgtatttccctaacagcgtctatcccatg
ctgcctttgagtttgtctcaaggggcatgctcattaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctttagacgatttgaaaaacgcccgattatctcaaggcgttatt
gaagttagggctaattgcacttatgaagaaatcaattattttttaagcgcccaacaaagc
tctttagataaagatttgcaacaaagccttttagggtttttagaaatggctttaaagtta
aaaaaggagcgtttaaaaaaggggtttaatttcaattcatttgaaaacaagctgtatttg
aatgaagaaggtcgtatagaaaaaattgaaacagaaaaagaaagcgatgcgcacaccctc
atagaagaagccatgctcttagccaaccagtctagcgcagggttattagatgagcatttt
caaaataaagggatataccgcacccataaagagccgagtttggagcagcaaaaacgcctc
tacgctaagctttttgattatgagatcgtgcgccctaaaaacatgggcttttttcctttt
ttagagcatgccttaaagatagccaaagaaaagagtatagagagagaagtttcacgcttg
atcattaagtctcaaaatttagccctttatagccccatgcaagaaagccattttggtttg
gggtttattagctatacgcatttcacttcgcccattagacgatacagcgatttagccttg
cacaggcttttaaaagaattgttattccatcaagctaaaggctgctcgtatctgttagaa
gaaacgcctgaattatgcgctgaattgaacgctttacaaaaaaaggccgctttgattgaa
agggatttcatcaaacgcaaattcgcccgcttagctttagagtttttagaaaaagaattt
ttgggcgtggttttagaggttaaagattgggtggtggtggggttaaaagaatttataggg
cttaaagttttagtcaaaacgaacaaagtttttaagcctttagaaaaggtgcgcgttaca
atcacgcatgcggatttgattttagggcaagttagaggcgaaatcacagaaaggattaaa
gagcatgtatcgtaa
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